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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002829

染色体: Chr04 坐标: 44388518-44397246 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002829
名称SmilChr04G002829
描述potassium channel SKOR
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向44388518 - 44397246 / -

ID 对照

NCBI Gene IDLOC131021903
GeneID131021903
locus_tag-
NCBI NameLOC131021903
原始查询LOC131021903

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述potassium channel SKOR
产物potassium channel SKOR
ArabidopsisAT3G02850 (SKOR)
STELAR K+ outward rectifier [Source:NCBI gene (formerly Entrezgene);Acc:821052]
identity=74.8; qcov=0.999; evalue=0; confidence=high
RiceOs06g0250600 (OsK5.2)
-
identity=70.5; qcov=0.997; evalue=0; confidence=high
GOGO:0005249 (voltage-gated potassium channel activity); GO:0005515 (protein binding); GO:0006813 (potassium ion transport); GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG-
PfamPF00023 (Ank); PF00027 (cNMP_binding); PF00520 (Ion_trans); PF07885 (Ion_trans_2); PF11834 (KHA); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5)
InterPro-
eggNOG-
NRGeneID:131021903

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057807218.1
2 Cell projection 细胞突起 0.80000 XP_057807218.1
3 Axon Axon 0.40000 XP_057807218.1
4 Cytoplasmic vesicle 细胞质囊泡 0.20000 XP_057807220.1
5 Dendrite Dendrite 0.20000 XP_057807218.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:44389069 G A EMS_canonical_SNV CDS_variant 1 C80
Chr4:44390337 AG A 1bp_deletion frameshift_variant 23 A14,A22,B100,B112,B118,B133,B15,B16,B21,B28,B36,B41,B47,B61,B89,B99,C21,C24,C34,C50,C57,C61,C87
Chr4:44390484 G A EMS_canonical_SNV CDS_variant 3 A21,B122,B20
Chr4:44391025 C T EMS_canonical_SNV CDS_variant 3 B114,B131,C45
Chr4:44392640 G A EMS_canonical_SNV CDS_variant 1 C8
Chr4:44393030 C T EMS_canonical_SNV CDS_variant 1 A14
Chr4:44393670 G A EMS_canonical_SNV CDS_variant 1 C52
Chr4:44396401 C T EMS_canonical_SNV CDS_variant 1 C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807218.1
837 aa
N
1
418
837
Ion_trans
Ion_trans_2
cNMP_binding
Ank_4
Ank_2
Ank_5
Ank_3
Ank
Ank
Ank_2
Ank_4
Ank_5
Ank
KHA
C
PF00520 Ion_trans 87-335 aa PF07885 Ion_trans_2 276-333 aa PF00027 cNMP_binding 427-512 aa PF13637 Ank_4 560-606 aa PF12796 Ank_2 560-643 aa PF13857 Ank_5 577-623 aa PF13606 Ank_3 585-614 aa PF00023 Ank 585-617 aa PF00023 Ank 619-643 aa PF12796 Ank_2 656-736 aa PF13637 Ank_4 658-694 aa PF13857 Ank_5 669-721 aa PF00023 Ank 682-713 aa PF11834 KHA 762-832 aa
XP_057807219.1
836 aa
N
1
418
836
Ion_trans
Ion_trans_2
cNMP_binding
Ank_4
Ank_2
Ank_5
Ank_3
Ank
Ank
Ank_2
Ank_4
Ank_5
Ank
KHA
C
PF00520 Ion_trans 87-335 aa PF07885 Ion_trans_2 276-333 aa PF00027 cNMP_binding 427-512 aa PF13637 Ank_4 560-606 aa PF12796 Ank_2 560-643 aa PF13857 Ank_5 577-623 aa PF13606 Ank_3 585-614 aa PF00023 Ank 585-617 aa PF00023 Ank 619-643 aa PF12796 Ank_2 656-736 aa PF13637 Ank_4 658-694 aa PF13857 Ank_5 669-721 aa PF00023 Ank 682-713 aa PF11834 KHA 761-831 aa
XP_057807220.1
772 aa
N
1
386
772
Ion_trans
Ion_trans_2
cNMP_binding
Ank_4
Ank_2
Ank_5
Ank_3
Ank
Ank
Ank_2
Ank_4
Ank_5
Ank
KHA
C
PF00520 Ion_trans 22-270 aa PF07885 Ion_trans_2 211-268 aa PF00027 cNMP_binding 362-447 aa PF13637 Ank_4 495-541 aa PF12796 Ank_2 495-578 aa PF13857 Ank_5 512-558 aa PF13606 Ank_3 520-549 aa PF00023 Ank 520-552 aa PF00023 Ank 554-578 aa PF12796 Ank_2 591-671 aa PF13637 Ank_4 593-629 aa PF13857 Ank_5 604-656 aa PF00023 Ank 617-648 aa PF11834 KHA 697-767 aa
XP_057807221.1
771 aa
N
1
386
771
Ion_trans
Ion_trans_2
cNMP_binding
Ank_4
Ank_2
Ank_5
Ank_3
Ank
Ank
Ank_2
Ank_4
Ank_5
Ank
KHA
C
PF00520 Ion_trans 22-270 aa PF07885 Ion_trans_2 211-268 aa PF00027 cNMP_binding 362-447 aa PF13637 Ank_4 495-541 aa PF12796 Ank_2 495-578 aa PF13857 Ank_5 512-558 aa PF13606 Ank_3 520-549 aa PF00023 Ank 520-552 aa PF00023 Ank 554-578 aa PF12796 Ank_2 591-671 aa PF13637 Ank_4 593-629 aa PF13857 Ank_5 604-656 aa PF00023 Ank 617-648 aa PF11834 KHA 696-766 aa
XP_057807222.1
688 aa
N
1
344
688
Ion_trans
Ion_trans_2
cNMP_binding
Ank_4
Ank_2
Ank_5
Ank_3
Ank
Ank
Ank_2
Ank_4
Ank_5
Ank
KHA
C
PF00520 Ion_trans 9-186 aa PF07885 Ion_trans_2 127-184 aa PF00027 cNMP_binding 278-363 aa PF13637 Ank_4 411-457 aa PF12796 Ank_2 411-494 aa PF13857 Ank_5 428-474 aa PF13606 Ank_3 436-465 aa PF00023 Ank 436-468 aa PF00023 Ank 470-494 aa PF12796 Ank_2 507-587 aa PF13637 Ank_4 508-545 aa PF13857 Ank_5 520-572 aa PF00023 Ank 533-564 aa PF11834 KHA 613-683 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057807218.1 Pfam PF00520 Ion_trans Family 87 335 8.9e-31 107.6 Ion transport protein
XP_057807218.1 Pfam PF07885 Ion_trans_2 Family 276 333 3e-08 34.1 Ion channel
XP_057807218.1 Pfam PF00027 cNMP_binding Domain 427 512 1.3e-18 67.4 Cyclic nucleotide-binding domain
XP_057807218.1 Pfam PF13637 Ank_4 Repeat 560 606 6.1e-26 90.6 Ankyrin repeats (many copies)
XP_057807218.1 Pfam PF12796 Ank_2 Repeat 560 643 5.3e-27 94.9 Ankyrin repeats (3 copies)
XP_057807218.1 Pfam PF13857 Ank_5 Repeat 577 623 4.8e-19 69.0 Ankyrin repeats (many copies)
XP_057807218.1 Pfam PF13606 Ank_3 Repeat 585 614 3.5e-15 55.1 Ankyrin repeat
XP_057807218.1 Pfam PF00023 Ank Repeat 585 617 3.9e-25 87.2 Ankyrin repeat
XP_057807218.1 Pfam PF00023 Ank Repeat 619 643 3.9e-25 87.2 Ankyrin repeat
XP_057807218.1 Pfam PF12796 Ank_2 Repeat 656 736 5.3e-27 94.9 Ankyrin repeats (3 copies)
XP_057807218.1 Pfam PF13637 Ank_4 Repeat 658 694 6.1e-26 90.6 Ankyrin repeats (many copies)
XP_057807218.1 Pfam PF13857 Ank_5 Repeat 669 721 4.8e-19 69.0 Ankyrin repeats (many copies)
XP_057807218.1 Pfam PF00023 Ank Repeat 682 713 3.9e-25 87.2 Ankyrin repeat
XP_057807218.1 Pfam PF11834 KHA Family 762 832 4.4e-22 78.6 KHA, dimerisation domain of potassium ion channel
XP_057807219.1 Pfam PF00520 Ion_trans Family 87 335 8.9e-31 107.6 Ion transport protein
XP_057807219.1 Pfam PF07885 Ion_trans_2 Family 276 333 3e-08 34.1 Ion channel
XP_057807219.1 Pfam PF00027 cNMP_binding Domain 427 512 1.3e-18 67.4 Cyclic nucleotide-binding domain
XP_057807219.1 Pfam PF13637 Ank_4 Repeat 560 606 6.1e-26 90.6 Ankyrin repeats (many copies)
XP_057807219.1 Pfam PF12796 Ank_2 Repeat 560 643 5.2e-27 95.0 Ankyrin repeats (3 copies)
XP_057807219.1 Pfam PF13857 Ank_5 Repeat 577 623 4.7e-19 69.0 Ankyrin repeats (many copies)
XP_057807219.1 Pfam PF13606 Ank_3 Repeat 585 614 3.5e-15 55.1 Ankyrin repeat
XP_057807219.1 Pfam PF00023 Ank Repeat 585 617 3.9e-25 87.2 Ankyrin repeat
XP_057807219.1 Pfam PF00023 Ank Repeat 619 643 3.9e-25 87.2 Ankyrin repeat
XP_057807219.1 Pfam PF12796 Ank_2 Repeat 656 736 5.2e-27 95.0 Ankyrin repeats (3 copies)
XP_057807219.1 Pfam PF13637 Ank_4 Repeat 658 694 6.1e-26 90.6 Ankyrin repeats (many copies)
XP_057807219.1 Pfam PF13857 Ank_5 Repeat 669 721 4.7e-19 69.0 Ankyrin repeats (many copies)
XP_057807219.1 Pfam PF00023 Ank Repeat 682 713 3.9e-25 87.2 Ankyrin repeat
XP_057807219.1 Pfam PF11834 KHA Family 761 831 4.4e-22 78.6 KHA, dimerisation domain of potassium ion channel
XP_057807220.1 Pfam PF00520 Ion_trans Family 22 270 7.6e-31 107.9 Ion transport protein
XP_057807220.1 Pfam PF07885 Ion_trans_2 Family 211 268 2.7e-08 34.3 Ion channel
XP_057807220.1 Pfam PF00027 cNMP_binding Domain 362 447 1.1e-18 67.6 Cyclic nucleotide-binding domain
XP_057807220.1 Pfam PF13637 Ank_4 Repeat 495 541 4.2e-26 91.1 Ankyrin repeats (many copies)
XP_057807220.1 Pfam PF12796 Ank_2 Repeat 495 578 4.2e-27 95.3 Ankyrin repeats (3 copies)
XP_057807220.1 Pfam PF13857 Ank_5 Repeat 512 558 4.5e-19 69.0 Ankyrin repeats (many copies)
XP_057807220.1 Pfam PF13606 Ank_3 Repeat 520 549 2.5e-15 55.6 Ankyrin repeat
XP_057807220.1 Pfam PF00023 Ank Repeat 520 552 2.2e-25 88.0 Ankyrin repeat
XP_057807220.1 Pfam PF00023 Ank Repeat 554 578 2.2e-25 88.0 Ankyrin repeat
XP_057807220.1 Pfam PF12796 Ank_2 Repeat 591 671 4.2e-27 95.3 Ankyrin repeats (3 copies)
XP_057807220.1 Pfam PF13637 Ank_4 Repeat 593 629 4.2e-26 91.1 Ankyrin repeats (many copies)
XP_057807220.1 Pfam PF13857 Ank_5 Repeat 604 656 4.5e-19 69.0 Ankyrin repeats (many copies)
XP_057807220.1 Pfam PF00023 Ank Repeat 617 648 2.2e-25 88.0 Ankyrin repeat
XP_057807220.1 Pfam PF11834 KHA Family 697 767 4.2e-22 78.6 KHA, dimerisation domain of potassium ion channel
XP_057807221.1 Pfam PF00520 Ion_trans Family 22 270 7.5e-31 107.9 Ion transport protein
XP_057807221.1 Pfam PF07885 Ion_trans_2 Family 211 268 2.7e-08 34.3 Ion channel
XP_057807221.1 Pfam PF00027 cNMP_binding Domain 362 447 1.1e-18 67.6 Cyclic nucleotide-binding domain
XP_057807221.1 Pfam PF13637 Ank_4 Repeat 495 541 4.1e-26 91.1 Ankyrin repeats (many copies)
XP_057807221.1 Pfam PF12796 Ank_2 Repeat 495 578 4.2e-27 95.3 Ankyrin repeats (3 copies)
XP_057807221.1 Pfam PF13857 Ank_5 Repeat 512 558 4.5e-19 69.1 Ankyrin repeats (many copies)
XP_057807221.1 Pfam PF13606 Ank_3 Repeat 520 549 2.5e-15 55.6 Ankyrin repeat
XP_057807221.1 Pfam PF00023 Ank Repeat 520 552 2.2e-25 88.0 Ankyrin repeat
XP_057807221.1 Pfam PF00023 Ank Repeat 554 578 2.2e-25 88.0 Ankyrin repeat
XP_057807221.1 Pfam PF12796 Ank_2 Repeat 591 671 4.2e-27 95.3 Ankyrin repeats (3 copies)
XP_057807221.1 Pfam PF13637 Ank_4 Repeat 593 629 4.1e-26 91.1 Ankyrin repeats (many copies)
XP_057807221.1 Pfam PF13857 Ank_5 Repeat 604 656 4.5e-19 69.1 Ankyrin repeats (many copies)
XP_057807221.1 Pfam PF00023 Ank Repeat 617 648 2.2e-25 88.0 Ankyrin repeat
XP_057807221.1 Pfam PF11834 KHA Family 696 766 4.2e-22 78.6 KHA, dimerisation domain of potassium ion channel
XP_057807222.1 Pfam PF00520 Ion_trans Family 9 186 8.3e-23 81.5 Ion transport protein
XP_057807222.1 Pfam PF07885 Ion_trans_2 Family 127 184 2.4e-08 34.4 Ion channel
XP_057807222.1 Pfam PF00027 cNMP_binding Domain 278 363 9.7e-19 67.8 Cyclic nucleotide-binding domain
XP_057807222.1 Pfam PF13637 Ank_4 Repeat 411 457 2.5e-26 91.8 Ankyrin repeats (many copies)
XP_057807222.1 Pfam PF12796 Ank_2 Repeat 411 494 3.2e-27 95.7 Ankyrin repeats (3 copies)
XP_057807222.1 Pfam PF13857 Ank_5 Repeat 428 474 3.2e-19 69.5 Ankyrin repeats (many copies)
XP_057807222.1 Pfam PF13606 Ank_3 Repeat 436 465 1.2e-15 56.5 Ankyrin repeat
XP_057807222.1 Pfam PF00023 Ank Repeat 436 468 1e-25 89.1 Ankyrin repeat
XP_057807222.1 Pfam PF00023 Ank Repeat 470 494 1e-25 89.1 Ankyrin repeat
XP_057807222.1 Pfam PF12796 Ank_2 Repeat 507 587 3.2e-27 95.7 Ankyrin repeats (3 copies)
XP_057807222.1 Pfam PF13637 Ank_4 Repeat 508 545 2.5e-26 91.8 Ankyrin repeats (many copies)
XP_057807222.1 Pfam PF13857 Ank_5 Repeat 520 572 3.2e-19 69.5 Ankyrin repeats (many copies)
XP_057807222.1 Pfam PF00023 Ank Repeat 533 564 1e-25 89.1 Ankyrin repeat
XP_057807222.1 Pfam PF11834 KHA Family 613 683 3.5e-22 78.9 KHA, dimerisation domain of potassium ion channel

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XM_057951236.1
TTAATAAAGTATACTTTTTACTAACTCTTACACTATTATTTACAGGACCGATCAGCTATCCACCGTGGGCATGCATAACGTGCCCACCATGATGTGACAATTGTAATTATAGTAAAATAATTTTAATTAGAATAAGATTTATTATTTATCTTTCCTAATTAAAATTGTCACATCAATGGTGGACACGTTTTGCTTGTCCACGGTGGGTAGGTGATCGGTTCTGTATTTATATATACAAAACATCCAGATCTTCATGTATA...
XM_057951235.1
TTAATAAAGTATACTTTTTACTAACTCTTACACTATTATTTACAGGACCGATCAGCTATCCACCGTGGGCATGCATAACGTGCCCACCATGATGTGACAATTGTAATTATAGTAAAATAATTTTAATTAGAATAAGATTTATTATTTATCTTTCCTAATTAAAATTGTCACATCAATGGTGGACACGTTTTGCTTGTCCACGGTGGGTAGGTGATCGGTTCTGTATTTATATATACAAAACATCCAGATCTTCATGTATA...

CDS

5 records

下载 CDS FASTA
LOC131021903
ATGGAGTCGTTCAAGAAGAAATCATTCAAGATCGGGCACAGTGATAATGGAGAGGAAGGAAATTCGAGCCATGGCAGGGAGGAATACGTGGTGGAGGATTTGAGGGAGCGAATCCAGTCGTCACGCGACAGCCGACTCACTCTGGTCGAGAACGAGTTGGAGATGGACTTGACTCGGCGGAGGTTCAGCAGGTACAGCGTCATCAATGGATTGAAAGACCTATCTCAAGGCTTGTTCATCCACCCCGACAACAGGTGGTA...
LOC131021903
ATGGAGTCGTTCAAGAAGAAATCATTCAAGATCGGGCACAGTGATAATGGAGAGGAAGGAAATTCGAGCCATGGCAGGGAGGAATACGTGGTGGAGGATTTGAGGGAGCGAATCCAGTCGTCACGCGACAGCCGACTCACTCTGGTCGAGAACGAGTTGGAGATGGACTTGACTCGGCGGAGGTTCAGCAGGTACAGCGTCATCAATGGATTGAAAGACCTATCTCAAGGCTTGTTCATCCACCCCGACAACAGGTGGTA...

Protein

5 records

下载 Protein FASTA
XP_057807218.1
MESFKKKSFKIGHSDNGEEGNSSHGREEYVVEDLRERIQSSRDSRLTLVENELEMDLTRRRFSRYSVINGLKDLSQGLFIHPDNRWYKAWEKFILIWAIYSSFFTPLEFGFFRGLPENLFILDIVGQVAFLLDIILQFFVAYRDSHSYKMVYKRNPIALRYIKSHFFPDLLACMPWDIIYKACGKKEEVRYLLWIRLIRVRRLTDFFQRMEKDIRINYLFTRIVKLIAVELYCTHTAACIFYYLATTLPQEKEGYTWIGS...
XP_057807219.1
MESFKKKSFKIGHSDNGEEGNSSHGREEYVVEDLRERIQSSRDSRLTLVENELEMDLTRRRFSRYSVINGLKDLSQGLFIHPDNRWYKAWEKFILIWAIYSSFFTPLEFGFFRGLPENLFILDIVGQVAFLLDIILQFFVAYRDSHSYKMVYKRNPIALRYIKSHFFPDLLACMPWDIIYKACGKKEEVRYLLWIRLIRVRRLTDFFQRMEKDIRINYLFTRIVKLIAVELYCTHTAACIFYYLATTLPQEKEGYTWIGS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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