当前解析结果
SmilChr04G002811| 统一新 Gene ID | SmilChr04G002811 |
|---|---|
| 名称 | SmilChr04G002811 |
| 描述 | cysteine-rich receptor-like protein kinase 2 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 44108660 - 44111444 / - |
| NCBI Gene ID | LOC131021909 |
|---|---|
| GeneID | 131021909 |
| locus_tag | - |
| NCBI Name | LOC131021909 |
| 原始查询 | LOC131021909 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cysteine-rich receptor-like protein kinase 2 |
| 产物 | cysteine-rich receptor-like protein kinase 2 |
| Arabidopsis | AT1G70520 (CRK2)cysteine-rich RLK (RECEPTOR-like protein kinase) 2 [Source:NCBI gene (formerly Entrezgene);Acc:843389] identity=36.3; qcov=0.975; evalue=9.73e-113; confidence=medium |
| Rice | Os11g0470500- identity=48; qcov=0.949; evalue=1.77e-166; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF01657 (Stress-antifung); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021909 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057807230.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057807230.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057807230.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057807230.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057807230.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:44109036 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr4:44109041 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr4:44109136 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr4:44109351 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
Chr4:44109434 |
C |
CAG |
2bp_insertion | frameshift_variant | 2 | B47,B71 |
Chr4:44109434 |
C |
CAG |
2bp_insertion | CDS_variant | 2 | B47,B71 |
Chr4:44109594 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C36 |
Chr4:44109594 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C36 |
Chr4:44109877 |
G |
A |
EMS_canonical_SNV | stop_gained | 31 | A18,A21,B119,B12,B123,B124,B128,B135,B136,B14,B27,B3,B41,B46,B61,B63,B94,B95,B98,C11,C14,C17,C22,C24,C29,C33,C47,C5,C69,C73,C85 |
Chr4:44110344 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C58 |
Chr4:44110344 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C58 |
Chr4:44110419 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A21,B122,B20,C38,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807230.1PF01657
Stress-antifung 36-131 aa
PF01657
Stress-antifung 151-237 aa
PF00069
Pkinase 325-590 aa
PF07714
PK_Tyr_Ser-Thr 327-592 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807230.1 |
Pfam | PF01657 |
Stress-antifung | Family | 36 | 131 | 8.3e-29 | 100.9 | Salt stress response/antifungal |
XP_057807230.1 |
Pfam | PF01657 |
Stress-antifung | Family | 151 | 237 | 8.3e-29 | 100.9 | Salt stress response/antifungal |
XP_057807230.1 |
Pfam | PF00069 |
Pkinase | Domain | 325 | 590 | 4.2e-49 | 168.0 | Protein kinase domain |
XP_057807230.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 327 | 592 | 7.6e-47 | 160.5 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。