当前解析结果
SmilChr04G002834| 统一新 Gene ID | SmilChr04G002834 |
|---|---|
| 名称 | SmilChr04G002834 |
| 描述 | plant intracellular Ras-group-related LRR protein 6-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 44450127 - 44453661 / + |
| NCBI Gene ID | LOC131021943 |
|---|---|
| GeneID | 131021943 |
| locus_tag | - |
| NCBI Name | LOC131021943 |
| 原始查询 | LOC131021943 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | plant intracellular Ras-group-related LRR protein 6-like |
| 产物 | plant intracellular Ras-group-related LRR protein 6-like |
| Arabidopsis | AT3G15410 (AT3G15410)Leucine-rich repeat (LRR) family protein [Source:NCBI gene (formerly Entrezgene);Acc:820780] identity=51.4; qcov=0.973; evalue=7.73e-21; confidence=medium |
| Rice | Os02g0826600 (OsIRL6)- identity=64.2; qcov=0.609; evalue=1.01e-17; confidence=low |
| GO | GO:0005730 (nucleolus); GO:0032040 (small-subunit processome) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021943 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057807270.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057807270.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057807270.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057807270.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057807270.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:44452937 |
CA |
C |
1bp_deletion | frameshift_variant | 4 | A8,B11,B133,B57 |
Chr4:44452937 |
CA |
C |
1bp_deletion | CDS_variant | 4 | A8,B11,B133,B57 |
Chr4:44452958 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
Chr4:44453461 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr4:44453484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C55 |
Chr4:44453541 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
8 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。