Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002871`

染色体: Chr04 坐标: 44828995-44833853 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002871`
名称	SmilChr04G002871
描述	probable rhamnogalacturonate lyase B
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	44828995 - 44833853 / `-`

ID 对照

NCBI Gene ID	`LOC131021959`
GeneID	`131021959`
locus_tag	`-`
NCBI Name	`LOC131021959`
原始查询	`LOC131021959`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable rhamnogalacturonate lyase B
产物	probable rhamnogalacturonate lyase B
Arabidopsis	`AT1G09910` (AT1G09910) Rhamnogalacturonate lyase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837523] identity=56.2; qcov=0.947; evalue=0; confidence=high
Rice	`Os08g0554100` - identity=56.9; qcov=0.946; evalue=0; confidence=high
GO	GO:0003824 (catalytic activity); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding)
KEGG	-
Pfam	PF06045 (Rhamnogal_lyase); PF14683 (CBM-like); PF14686 (fn3_3)
InterPro	-
eggNOG	-
NR	GeneID:131021959

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.60000	`XP_057807278.1`
2	Vacuole	液泡	0.40000	`XP_057807278.1`
3	Cell wall	细胞壁	0.20000	`XP_057807279.1`
4	Nucleus	细胞核	0.00000	`XP_057807278.1`
5	Chromosome	染色体	0.00000	`XP_057807278.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:44829301`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr4:44829398`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B130,B63,C53
`Chr4:44829483`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr4:44830585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,B20
`Chr4:44830891`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B65,B82,C60
`Chr4:44831562`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B74,C28
`Chr4:44831572`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B114,B41,B75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807278.1

668 aa

334

668

Rhamnogal_lyase

fn3_3

CBM-like

PF06045 Rhamnogal_lyase 43-236 aa PF14686 fn3_3 386-456 aa PF14683 CBM-like 472-660 aa

XP_057807279.1

665 aa

332

665

Rhamnogal_lyase

fn3_3

CBM-like

PF06045 Rhamnogal_lyase 40-233 aa PF14686 fn3_3 383-453 aa PF14683 CBM-like 469-657 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807278.1`	Pfam	`PF06045`	Rhamnogal_lyase	Family	43	236	1.5e-77	260.5	Rhamnogalacturonate lyase family
`XP_057807278.1`	Pfam	`PF14686`	fn3_3	Domain	386	456	6.8e-26	90.6	Polysaccharide lyase family 4, domain II
`XP_057807278.1`	Pfam	`PF14683`	CBM-like	Domain	472	660	4.7e-50	170.3	Polysaccharide lyase family 4, domain III
`XP_057807279.1`	Pfam	`PF06045`	Rhamnogal_lyase	Family	40	233	1.5e-77	260.5	Rhamnogalacturonate lyase family
`XP_057807279.1`	Pfam	`PF14686`	fn3_3	Domain	383	453	6.7e-26	90.6	Polysaccharide lyase family 4, domain II
`XP_057807279.1`	Pfam	`PF14683`	CBM-like	Domain	469	657	4.7e-50	170.3	Polysaccharide lyase family 4, domain III

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951296.1
CTAAATACCTAATGCAATAGAAGTCAAGTCTTAATGAGATTTCGTTTACCACATCACTACCTATAGATTTTGTTTATAAATATAGAGCCGCTATATTTGGAAAACTTAAACCTTATAGGACTCAATTAATTTTCGTCATAATAGTAGTAACTCGGATTCGTAAAATCTTTATAAAATCGTTGCAATATTGTTGATTCCTTTTCATACTGTCCCAAAAGAATCAACTGCTCCATACAATCAACTTGGCTAATTAAGACAGC...

XM_057951295.1
TATTTGGAAAACTTAAACCTTATAGGACTCAATTAATTTTCGTCATAATAGTAGTAACTCGGATTCGTAAAATCTTTATAAAATCGTTGCAATATTGTTGATTCCTTTTCATACTGTCCCAAAAGAATCAACTGCTCCATACAATCAACTTGGCTAATTAAGACAGCAAATTAAGTTGAAGCAATCGAATTCACGCACAAGTTTCAGATCAATAACTTGTTTCTTTCCACGCTTTTTGATGCAGAGAATGGCACGATCGC...

CDS

2 records

下载 CDS FASTA

LOC131021959
ATGCAGAGAATGGCACGATCGCTTCCAGTTCCACCATGGCCTCTAATAATACTATGTTTCTTCTTCCTTCTTGCTAAGATCCATGCAGTCAGATTAGTTCCACTGAGTAATCAAGAAAAGTCACCTCCAGTCAAGCTCCATGTAACGGACACCCATGTGGAGATAGACAACGGCATTGTTAGACTAACACTAATGAATCCGGCCGGGTTGATCACAAGCCTCGGATACAAAGGGGTTAGCAATATTCTTGAGTATCGCAA...

LOC131021959
ATGGCACGATCGCTTCCAGTTCCACCATGGCCTCTAATAATACTATGTTTCTTCTTCCTTCTTGCTAAGATCCATGCAGTCAGATTAGTTCCACTGAGTAATCAAGAAAAGTCACCTCCAGTCAAGCTCCATGTAACGGACACCCATGTGGAGATAGACAACGGCATTGTTAGACTAACACTAATGAATCCGGCCGGGTTGATCACAAGCCTCGGATACAAAGGGGTTAGCAATATTCTTGAGTATCGCAACAGAGAAGG...

Protein

2 records

下载 Protein FASTA

XP_057807278.1
MQRMARSLPVPPWPLIILCFFFLLAKIHAVRLVPLSNQEKSPPVKLHVTDTHVEIDNGIVRLTLMNPAGLITSLGYKGVSNILEYRNREGRRGYWDIVWSRPDRNGSHFDTLQCTSLRVIAESDDQVEVSFTKTWHRSLDREVPLNIDKRYILLRGSSGFYSYAIFEHMEGWPDLNIDEARIAFKLHQDMFHYMVISDNKQRIMPSERDRKVGDKLDYKEAVLITHPSNPRLRGEVDDKYQYSCDNKDNHVHGWISSDNP...

XP_057807279.1
MARSLPVPPWPLIILCFFFLLAKIHAVRLVPLSNQEKSPPVKLHVTDTHVEIDNGIVRLTLMNPAGLITSLGYKGVSNILEYRNREGRRGYWDIVWSRPDRNGSHFDTLQCTSLRVIAESDDQVEVSFTKTWHRSLDREVPLNIDKRYILLRGSSGFYSYAIFEHMEGWPDLNIDEARIAFKLHQDMFHYMVISDNKQRIMPSERDRKVGDKLDYKEAVLITHPSNPRLRGEVDDKYQYSCDNKDNHVHGWISSDNPRIG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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