Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000092`

染色体: Chr04 坐标: 824150-826076 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000092`
名称	SmilChr04G000092
描述	protein GRAVITROPIC IN THE LIGHT 1
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	824150 - 826076 / `+`

ID 对照

NCBI Gene ID	`LOC131022019`
GeneID	`131022019`
locus_tag	`-`
NCBI Name	`LOC131022019`
原始查询	`LOC131022019`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein GRAVITROPIC IN THE LIGHT 1
产物	protein GRAVITROPIC IN THE LIGHT 1
Arabidopsis	`AT3G60680` (AT3G60680) DUF641 family protein (DUF641) [Source:NCBI gene (formerly Entrezgene);Acc:825239] identity=47.2; qcov=0.93; evalue=1.49e-143; confidence=high
Rice	`Os10g0508100` (OSJNBb0015K05.7) - identity=40.4; qcov=0.882; evalue=2.56e-91; confidence=medium
GO	GO:0009639 (response to red or far red light); GO:0009959 (negative gravitropism)
KEGG	-
Pfam	PF04859 (DUF641); PF24994 (GIL1_IRKI_C)
InterPro	-
eggNOG	-
NR	GeneID:131022019

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807364.1`
2	Cytoplasm	细胞质	0.60000	`XP_057807364.1`
3	Cytosol	细胞质基质	0.20000	`XP_057807364.1`
4	Chromosome	染色体	0.00000	`XP_057807364.1`
5	Centromere	着丝粒	0.00000	`XP_057807364.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:824430`	`C`	`CAG`	2bp_insertion	frameshift_variant	39	A10,A13,B109,B118,B124,B128,B13,B18,B24,B26,B40,B42,B43,B49,B58,B59,B6,B67,B68,B78,B79,B85,B88,B92,B95,C25,C29,C32,C34,C37,C5,C60,C63,C64,C66,C67,C85,D11,D4
`Chr4:824630`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C2,C6
`Chr4:824840`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A7,B29,B73,D11
`Chr4:825044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr4:825171`	`C`	`T`	EMS_canonical_SNV	stop_gained	120	A10,A15,A18,A19,A2,A21,A23,A25,A3,A4,A5,A7,B10,B100,B105,B109,B11,B111,B112,B113,B114,B115,B121,B122,B124,B126,B127,B129,B130,B133,B135,B138,B139,B15,B17,B20,B21,B26,B3,B31,B32,B35,B37,B38,B39,B4,B40,B44,B47,B49,B5,B52,B54,B55,B56,B57,B62,B63,B68,B69,B71,B75,B76,B77,B78,B79,B80,B81,B82,B84,B85,B87,B9,B90,B91,B92,B94,B95,B96,B99,C1,C11,C14,C18,C2,C20,C21,C26,C28,C29,C3,C33,C34,C37,C39,C40,C41,C43,C44,C46,C50,C54,C61,C62,C64,C69,C7,C72,C75,C76,C77,C79,C81,C82,C85,C86,C9,D2,D6,D7
`Chr4:825392`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B80,B97
`Chr4:825416`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr4:825500`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr4:825501`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr4:825831`	`GT`	`G`	1bp_deletion	frameshift_variant	1	B98
`Chr4:825831`	`GT`	`G`	1bp_deletion	CDS_variant	1	B98

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807364.1

544 aa

272

544

DUF641

GIL1_IRKI_C

PF04859 DUF641 141-268 aa PF24994 GIL1_IRKI_C 480-534 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807364.1`	Pfam	`PF04859`	DUF641	Family	141	268	7.4e-27	94.9	Plant protein of unknown function (DUF641)
`XP_057807364.1`	Pfam	`PF24994`	GIL1_IRKI_C	Domain	480	534	1.1e-18	67.6	GIL1/IRKI C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057951381.1
TGATTAATTTGAAGTAGCATTAGTCTACAAGAAAATCAAAGAGAAAATGAAAAAATTTAAGTGGAAATCCCACTAAGTGCTCGCAATGATAGTTTTTTCACAGAGAGAAAAAGACACTCACGCACGCATTCCTTCCAACTCATTCAAAGCACAAAATTTTGGGGAAAATCGCAAGAAAAGAATACAATTTTTGCACCCAAAATTTCTTCAAATTTCTTCTATGTATAGATTCCGAGAGATGGTAGAATTCGAGGGCGCTC...

CDS

1 records

下载 CDS FASTA

LOC131022019
ATGATAGTTTTTTCACAGAGAGAAAAAGACACTCACGCACGCATTCCTTCCAACTCATTCAAAGCACAAAATTTTGGGGAAAATCGCAAGAAAAGAATACAATTTTTGCACCCAAAATTTCTTCAAATTTCTTCTATGTATAGATTCCGAGAGATGGTAGAATTCGAGGGCGCTCCGTCGTCGAAGCAGCAGCAGCCGCCGCCGCCGCCGATTTCCGACATGTTCCAGAAGTTCGCCCTCGCTTTCAAGACCAAAACCTA...

Protein

1 records

下载 Protein FASTA

XP_057807364.1
MIVFSQREKDTHARIPSNSFKAQNFGENRKKRIQFLHPKFLQISSMYRFREMVEFEGAPSSKQQQPPPPPISDMFQKFALAFKTKTYELFAEEDDYAAVDSDCDVTLLLDSAEEFIPHQKVVVIKPDSGSGPDNSDAGLIRALIPSLFATLSSFEASYLQFQAAHVPEIDRGALEQADKSLVSILQKLTEMRNLYRESKRKGPGLSGGFDFPAASFWEFQVQENQSKLRVLETMVNTQQSQIDVKDDEAIELRKKLDRIR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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