Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000096`

染色体: Chr04 坐标: 871936-875416 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000096`
名称	SmilChr04G000096
描述	plasmodesmata-located protein 8
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	871936 - 875416 / `+`

ID 对照

NCBI Gene ID	`LOC131022023`
GeneID	`131022023`
locus_tag	`-`
NCBI Name	`LOC131022023`
原始查询	`LOC131022023`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	plasmodesmata-located protein 8
产物	plasmodesmata-located protein 8
Arabidopsis	`AT3G60720` (PDLP8) plasmodesmata-located protein 8 [Source:NCBI gene (formerly Entrezgene);Acc:825243] identity=55.6; qcov=0.945; evalue=7.23e-103; confidence=high
Rice	`Os04g0537800` - identity=50.6; qcov=0.923; evalue=5.16e-83; confidence=high
GO	GO:0009506 (plasmodesma)
KEGG	-
Pfam	PF01657 (Stress-antifung)
InterPro	-
eggNOG	-
NR	GeneID:131022023

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057807367.1`
2	Cell wall	细胞壁	0.20000	`XP_057807367.1`
3	Secreted	分泌到胞外	0.20000	`XP_057807368.1`
4	Nucleus	细胞核	0.00000	`XP_057807367.1`
5	Chromosome	染色体	0.00000	`XP_057807367.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:872041`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B109,B26,B91,C47,D6
`Chr4:872050`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,B53,C78
`Chr4:872219`	`GC`	`G`	1bp_deletion	frameshift_variant	2	B48,B98
`Chr4:872219`	`GC`	`G`	1bp_deletion	CDS_variant	2	B48,B98
`Chr4:872224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B26,B91,D6
`Chr4:872246`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr4:872255`	`CTA`	`C`	2bp_deletion	frameshift_variant	4	B10,B100,C72,C8
`Chr4:872255`	`CTA`	`C`	2bp_deletion	CDS_variant	4	B10,B100,C72,C8
`Chr4:872261`	`C`	`CGG`	2bp_insertion	frameshift_variant	4	B10,B100,C72,C8
`Chr4:872261`	`C`	`CGG`	2bp_insertion	CDS_variant	4	B10,B100,C72,C8
`Chr4:872265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B109,C47
`Chr4:872307`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807367.1

292 aa

146

292

Stress-antifung

PF01657 Stress-antifung 32-125 aa PF01657 Stress-antifung 148-224 aa

XP_057807368.1

272 aa

136

272

Stress-antifung

PF01657 Stress-antifung 32-125 aa PF01657 Stress-antifung 148-224 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807367.1`	Pfam	`PF01657`	Stress-antifung	Family	32	125	1.2e-31	110.0	Salt stress response/antifungal
`XP_057807367.1`	Pfam	`PF01657`	Stress-antifung	Family	148	224	1.2e-31	110.0	Salt stress response/antifungal
`XP_057807368.1`	Pfam	`PF01657`	Stress-antifung	Family	32	125	9.1e-32	110.4	Salt stress response/antifungal
`XP_057807368.1`	Pfam	`PF01657`	Stress-antifung	Family	148	224	9.1e-32	110.4	Salt stress response/antifungal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951384.1
AAACCAAACATTTATTTTTTTTAAAAAAGTGCAGGGAACAAAAACTGTTATTCCAATTTCACAAATGTTAACTCTCATTATCTTCATCTTCATCTTCTTCCTCTTCACCTTCTTCATCTTTACCTCCATCGACGCCCACGTCTTCATCTATGGCGGCTGCTCCCAAGACAAATACCCGCCAAACTCGCCCTACGAAGCCAACAAAAACTCCTTCCTCTCATCCATCGCCGCCGCCTCCTCCCTCGCCCTCTACCACGACT...

XM_057951385.1
AACCAAACATTTATTTTTTTTAAAAAAGTGCAGGGAACAAAAACTGTTATTCCAATTTCACAAATGTTAACTCTCATTATCTTCATCTTCATCTTCTTCCTCTTCACCTTCTTCATCTTTACCTCCATCGACGCCCACGTCTTCATCTATGGCGGCTGCTCCCAAGACAAATACCCGCCAAACTCGCCCTACGAAGCCAACAAAAACTCCTTCCTCTCATCCATCGCCGCCGCCTCCTCCCTCGCCCTCTACCACGACTT...

CDS

2 records

下载 CDS FASTA

LOC131022023
ATGTTAACTCTCATTATCTTCATCTTCATCTTCTTCCTCTTCACCTTCTTCATCTTTACCTCCATCGACGCCCACGTCTTCATCTATGGCGGCTGCTCCCAAGACAAATACCCGCCAAACTCGCCCTACGAAGCCAACAAAAACTCCTTCCTCTCATCCATCGCCGCCGCCTCCTCCCTCGCCCTCTACCACGACTTCGCCGTCGGCAACGACACCGCCGCCCCCGTCTTCGGCCTGCACCAGTGCCGCGGCGACCTATC...

Protein

2 records

下载 Protein FASTA

XP_057807367.1
MLTLIIFIFIFFLFTFFIFTSIDAHVFIYGGCSQDKYPPNSPYEANKNSFLSSIAAASSLALYHDFAVGNDTAAPVFGLHQCRGDLSPRDCAACIAGAINQIAVLCPDTYGASLQLDACFLRYERADFLGRLDAGLRYRRCGGADGDAEFWRRRDGVLAELEAAAGFRVSAAGDVEGYAQCLGDLAAEDCSACLAEAVAKVKTLCGAAAAAAADVFLAQCYVRYWESGYYDSSSSDSSNGDDVGETVAIIVGVVAGVAVL...

XP_057807368.1
MLTLIIFIFIFFLFTFFIFTSIDAHVFIYGGCSQDKYPPNSPYEANKNSFLSSIAAASSLALYHDFAVGNDTAAPVFGLHQCRGDLSPRDCAACIAGAINQIAVLCPDTYGASLQLDACFLRYERADFLGRLDAGLRYRRCGGADGDAEFWRRRDGVLAELEAAAGFRVSAAGDVEGYAQCLGDLAAEDCSACLAEAVAKVKTLCGAAAAAAADVFLAQCYVRYWESGYYDSSSSDSSNGDDVGETVAIIVGVVAGVAVL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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