Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000100`

染色体: Chr04 坐标: 905718-910298 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000100`
名称	SmilChr04G000100
描述	methionine aminopeptidase 1A-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	905718 - 910298 / `+`

ID 对照

NCBI Gene ID	`LOC131022026`
GeneID	`131022026`
locus_tag	`-`
NCBI Name	`LOC131022026`
原始查询	`LOC131022026`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	methionine aminopeptidase 1A-like
产物	methionine aminopeptidase 1A-like
Arabidopsis	`AT2G45240` (MAP1A) methionine aminopeptidase 1A [Source:NCBI gene (formerly Entrezgene);Acc:819132] identity=82.1; qcov=0.998; evalue=0; confidence=high
Rice	`Os10g0508400` - identity=80; qcov=0.98; evalue=0; confidence=high
GO	GO:0006508 (proteolysis); GO:0070006 (metalloaminopeptidase activity)
KEGG	-
Pfam	PF00557 (Peptidase_M24); PF01753 (zf-MYND); PF15801 (zf-C6H2)
InterPro	-
eggNOG	-
NR	GeneID:131022026

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057807371.1`
2	Cytoplasm	细胞质	0.80000	`XP_057807372.1`
3	Peroxisome	过氧化物酶体	0.20000	`XP_057807371.1`
4	Nucleus	细胞核	0.00000	`XP_057807372.1`
5	Chromosome	染色体	0.00000	`XP_057807372.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:906327`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr4:906335`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C23,C52
`Chr4:906348`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr4:906761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B38,B39,C20,C21
`Chr4:906780`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr4:907422`	`T`	`TTC`	2bp_insertion	frameshift_variant	20	B106,B115,B119,B15,B16,B54,B58,B59,B67,B7,B71,B78,B91,B95,B98,C35,C47,C51,C85,D3
`Chr4:907864`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B29
`Chr4:907866`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B18,B70,B85
`Chr4:908027`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr4:909303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:909601`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr4:909908`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B72,C25,C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807371.1

413 aa

206

413

zf-C6H2

Peptidase_M24

PF15801 zf-C6H2 16-59 aa PF00557 Peptidase_M24 153-380 aa

XP_057807372.1

403 aa

202

403

zf-MYND

zf-C6H2

Peptidase_M24

PF01753 zf-MYND 15-57 aa PF15801 zf-C6H2 16-59 aa PF00557 Peptidase_M24 153-381 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807371.1`	Pfam	`PF15801`	zf-C6H2	Domain	16	59	3.3e-15	56.7	zf-MYND-like zinc finger, mRNA-binding
`XP_057807371.1`	Pfam	`PF00557`	Peptidase_M24	Domain	153	380	2.6e-54	184.9	Metallopeptidase family M24
`XP_057807372.1`	Pfam	`PF01753`	zf-MYND	Domain	15	57	0.00012	22.7	MYND finger
`XP_057807372.1`	Pfam	`PF15801`	zf-C6H2	Domain	16	59	3.2e-15	56.7	zf-MYND-like zinc finger, mRNA-binding
`XP_057807372.1`	Pfam	`PF00557`	Peptidase_M24	Domain	153	381	5.1e-55	187.2	Metallopeptidase family M24

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951389.1
GACTTTGACCAAACCAACAATTCCACTACAGTCTATAAACCCTGCATCTCCATGTCCGTCTAAATTTTCTGCGGAAAACCCTAGCTTTCCTATTTTCCTCGAAATCACAGAATTTCAAAGTTGGAGAAAAGATGGCAGGTGGATCAGATGCTGTGGAGAGCACGGCCTTGTCTTGTGCTAGATGTGGCAAACCTGCTCATCTGCAGTGCCCCAAGTGCGTAGAACTAAAGCTTCCCCGTGAAGGTGCCGCCTTCTGTTCC...

XM_057951388.1
CAACAATTCCACTACAGTCTATAAACCCTGCATCTCCATGTCCGTCTAAATTTTCTGCGGAAAACCCTAGCTTTCCTATTTTCCTCGAAATCACAGAATTTCAAAGTTGGAGAAAAGATGGCAGGTGGATCAGATGCTGTGGAGAGCACGGCCTTGTCTTGTGCTAGATGTGGCAAACCTGCTCATCTGCAGTGCCCCAAGTGCGTAGAACTAAAGCTTCCCCGTGAAGGTGCCGCCTTCTGTTCCCAAGAGTGTTTCAA...

CDS

2 records

下载 CDS FASTA

LOC131022026
ATGGCAGGTGGATCAGATGCTGTGGAGAGCACGGCCTTGTCTTGTGCTAGATGTGGCAAACCTGCTCATCTGCAGTGCCCCAAGTGCGTAGAACTAAAGCTTCCCCGTGAAGGTGCCGCCTTCTGTTCCCAAGAGTGTTTCAAGGCATCCTGGAGTTCTCATAAATCTGTTCACTCGAATGCAAAATCTTCTTCCCCTGCACCTGAAAATTCTAGTGAACAAAATTCAGGCCTGCGCAATGATGGCTGGCTTTACTGTTT...

Protein

2 records

下载 Protein FASTA

XP_057807371.1
MAGGSDAVESTALSCARCGKPAHLQCPKCVELKLPREGAAFCSQECFKASWSSHKSVHSNAKSSSPAPENSSEQNSGLRNDGWLYCLRKGQARTPKLPHFDWTGPLRPYPISQKRIVPAHIEQPDWAIDGIPKIEPNSDLQHVVEIKTPEQIERMRETCRIAREVLDAAARIVRPGITTDEIDAVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARILEDGDIVNVDVTVYYKGVHGDLNETFFVGNVDEA...

XP_057807372.1
MAGGSDAVESTALSCARCGKPAHLQCPKCVELKLPREGAAFCSQECFKASWSSHKSVHSNAKSSSPAPENSSEQNSGLRNDGWLYCLRKGQARTPKLPHFDWTGPLRPYPISQKRIVPAHIEQPDWAIDGIPKIEPNSDLQHVVEIKTPEQIERMRETCRIAREVLDAAARIVRPGITTDEIDAVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARILEDGDIVNVDVTVYYKGVHGDLNETFFVGNVDEA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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