Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000107`

染色体: Chr04 坐标: 948675-952430 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000107`
名称	SmilChr04G000107
描述	transketolase, chloroplastic
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	948675 - 952430 / `+`

ID 对照

NCBI Gene ID	`LOC131022036`
GeneID	`131022036`
locus_tag	`-`
NCBI Name	`LOC131022036`
原始查询	`LOC131022036`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transketolase, chloroplastic
产物	transketolase%2C chloroplastic
Arabidopsis	`AT2G45290` (AT2G45290) Transketolase [Source:NCBI gene (formerly Entrezgene);Acc:819137] identity=82.6; qcov=1; evalue=0; confidence=high
Rice	`Os06g0133800` (OsTK) - identity=87.6; qcov=0.909; evalue=0; confidence=high
GO	GO:0004802 (transketolase activity); GO:0005829 (cytosol); GO:0006098 (pentose-phosphate shunt)
KEGG	smil00030 (Pentose phosphate pathway - Salvia miltiorrhiza (redroot sage)); smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00456 (Transketolase_N); PF02779 (Transket_pyr); PF02780 (Transketolase_C); PF22613 (Transketolase_C_1)
InterPro	-
eggNOG	-
NR	GeneID:131022036

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057807383.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057807383.1`
3	Nucleus	细胞核	0.00000	`XP_057807383.1`
4	Chromosome	染色体	0.00000	`XP_057807383.1`
5	Centromere	着丝粒	0.00000	`XP_057807383.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:949049`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr4:949084`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C80,D10
`Chr4:949139`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr4:949159`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C21
`Chr4:949180`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr4:949327`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr4:949351`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B37,B9
`Chr4:949375`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C19,D2
`Chr4:949886`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B107,B119,B69,C16,C42
`Chr4:950062`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr4:950409`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr4:950723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C3,C56

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807383.1

744 aa

372

744

Transketolase_N

Transket_pyr

Transketolase_C_1

Transketolase_C

PF00456 Transketolase_N 86-417 aa PF02779 Transket_pyr 435-605 aa PF22613 Transketolase_C_1 618-732 aa PF02780 Transketolase_C 630-736 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807383.1`	Pfam	`PF00456`	Transketolase_N	Domain	86	417	1.5e-151	504.8	Transketolase, thiamine diphosphate binding domain
`XP_057807383.1`	Pfam	`PF02779`	Transket_pyr	Domain	435	605	1.3e-52	178.7	Transketolase, pyrimidine binding domain
`XP_057807383.1`	Pfam	`PF22613`	Transketolase_C_1	Domain	618	732	6.5e-42	143.0	Transketolase-like TK C-terminal domain
`XP_057807383.1`	Pfam	`PF02780`	Transketolase_C	Domain	630	736	1.5e-12	48.2	Transketolase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057951400.1
GGGTAAATCATTATTTGTACCGTCTAAATTCTTCTCAACGTACAAATAATAACTAACATAACACACTCACTCTCACTTAAAATAAAACTAAAAAAAAAATCACATCGATCTTATAAAAAGTAGAAAGAAATGAATAGCATACACAAATAAAAGATTTATAAATTCTTATCCGGCAACTGAATTTTTTCTTTGTGAAAAGTCCCACACACCTCATATTTCTCCTTTTATCTCCACCAATTCTCTCTCACTCATTTCGACAA...

CDS

1 records

下载 CDS FASTA

LOC131022036
ATGGCTTCTTCCTCCTCTCTCACTCTCTCTCAAGCCATCCTCTCCCGCTCCTCCATCCCCCGCCATGGCTCCGCCCAGCAGCTCCACCCGCCCTCCGTCTCCATTCCCTCCTTCTCCGGCCTCAAAGCCGCCTCCTCCTCCTCCGCCGCCGCCTCCCTCTCCCGCCGCCGCTCCGCCGCCGTGGTCCGCCACCCCGTGACCGCCTCCGCCGCCGTCGAGACCCTCGAGAAGACCACCGAAACCGAGCTAGTGGAGAAGTC...

Protein

1 records

下载 Protein FASTA

XP_057807383.1
MASSSSLTLSQAILSRSSIPRHGSAQQLHPPSVSIPSFSGLKAASSSSAAASLSRRRSAAVVRHPVTASAAVETLEKTTETELVEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEDDLKNFRQWESRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARYNKPDSEIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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