Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G000112

染色体: Chr04 坐标: 976610-979359 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G000112
名称SmilChr04G000112
描述uncharacterized SmilChr04G000112
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向976610 - 979359 / -

ID 对照

NCBI Gene IDLOC131022042
GeneID131022042
locus_tag-
NCBI NameLOC131022042
原始查询LOC131022042

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述hit=Os06g0134900; species=rice; confidence=medium
产物hit=Os06g0134900; species=rice; confidence=medium
ArabidopsisAT2G45380 (AT2G45380)
myeloid leukemia factor [Source:NCBI gene (formerly Entrezgene);Acc:819145]
identity=49.3; qcov=0.808; evalue=1.73e-54; confidence=high
RiceOs06g0134900
-
identity=42.6; qcov=0.996; evalue=1.38e-57; confidence=medium
GO-
KEGG-
PfamPF10248 (Mlf1IP)
InterPro-
eggNOG-
NRGeneID:131022042

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.80000 XP_057807392.1
2 Cytosol 细胞质基质 0.80000 XP_057807394.1
3 Mitochondrion 线粒体 0.20000 XP_057807392.1
4 Peroxisome 过氧化物酶体 0.20000 XP_057807392.1
5 Nucleus 细胞核 0.00000 XP_057807394.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:977030 G A EMS_canonical_SNV CDS_variant 1 C85
Chr4:977185 C T EMS_canonical_SNV CDS_variant 1 B121
Chr4:977204 AG A 1bp_deletion frameshift_variant 3 A11,C16,C62
Chr4:977204 AG A 1bp_deletion CDS_variant 3 A11,C16,C62
Chr4:977225 G A EMS_canonical_SNV CDS_variant 1 D10
Chr4:977376 TAG T 2bp_deletion frameshift_variant 14 B11,B114,B120,B134,B17,B18,B23,B48,C18,C24,C27,C3,C30,C70
Chr4:977841 C T EMS_canonical_SNV CDS_variant 1 D11
Chr4:977854 G A EMS_canonical_SNV CDS_variant 4 B71,B78,B89,C61
Chr4:978020 C T EMS_canonical_SNV CDS_variant 1 A3
Chr4:978043 C T EMS_canonical_SNV CDS_variant 1 B45
Chr4:978073 C CAG 2bp_insertion frameshift_variant 75 A13,A14,A21,A23,A25,A3,A4,A5,A8,A9,B1,B10,B100,B105,B109,B110,B111,B115,B119,B123,B130,B131,B134,B136,B138,B16,B17,B19,B26,B27,B29,B3,B38,B46,B48,B49,B54,B60,B63,B65,B66,B71,B86,B9,B90,B93,B95,C1,C12,C13,C15,C16,C17,C24,C25,C27,C28,C32,C36,C40,C44,C45,C48,C50,C51,C52,C61,C8,C83,C84,C87,C9,D2,D3,D9
Chr4:978084 C T EMS_canonical_SNV CDS_variant 1 B45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057807392.1
308 aa
N
1
154
308
Mlf1IP
C
PF10248 Mlf1IP 45-236 aa
XP_057807393.1
308 aa
N
1
154
308
Mlf1IP
C
PF10248 Mlf1IP 45-236 aa
XP_057807394.1
266 aa
N
1
133
266
Mlf1IP
C
PF10248 Mlf1IP 45-236 aa
XP_057807395.1
266 aa
N
1
133
266
Mlf1IP
C
PF10248 Mlf1IP 45-236 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057807392.1 Pfam PF10248 Mlf1IP Family 45 236 2.1e-17 64.4 Myelodysplasia-myeloid leukemia factor 1-interacting protein
XP_057807393.1 Pfam PF10248 Mlf1IP Family 45 236 2.1e-17 64.4 Myelodysplasia-myeloid leukemia factor 1-interacting protein
XP_057807394.1 Pfam PF10248 Mlf1IP Family 45 236 7.5e-18 65.8 Myelodysplasia-myeloid leukemia factor 1-interacting protein
XP_057807395.1 Pfam PF10248 Mlf1IP Family 45 236 7.5e-18 65.8 Myelodysplasia-myeloid leukemia factor 1-interacting protein

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057951411.1
AGGCGCAGCATGTTGTAGATATGAAAGTATGCAAGAAATTCGACACGTGTCAGCTTTAGACGGATCCACTGTAAAGGCTATATATATTCCTCCGAGCTCGAAAATGTATTCGCCCTCGTTTCTCCAAATCTATTTTCTCTCTCATTCTAAGCCAGAGGCGGAAAATAGAGAATTGCGAGCGCAATGCAAAGCAACAGAGAAGTGAGAGAGGATTCCAGAGCTGCTGGTAGGCAGTTCGACAGTTCTGGTAGCTTTGGTTT...
XM_057951409.1
ATGTTGTAGATATGAAAGTATGCAAGAAATTCGACACGTGTCAGCTTTAGACGGATCCACTGTAAAGGCTATATATATTCCTCCGAGCTCGAAAATGTATTCGCCCTCGTTTCTCCAAATCTATTTTCTCTCTCATTCTAAGCCAGAGGCGGAAAATAGAGAATTGCGAGCGCAATGCAAAGCAACAGAGAAGTGAGAGAGGATTCCAGAGCTGCTGGTAGGCAGTTCGACAGTTCTGGTAGCTTTGGTTTCCCTGACAG...

CDS

4 records

下载 CDS FASTA
LOC131022042
ATGCAAAGCAACAGAGAAGTGAGAGAGGATTCCAGAGCTGCTGGTAGGCAGTTCGACAGTTCTGGTAGCTTTGGTTTCCCTGACAGCATGTTCTCCAGCATATTCGGAGGGAAGGATCCTTTTGATGATCCTTTCTTTTCCCGGTCCCATGGGAGTTTGTTTGGATCAGACAATGTTAGCTCCGGTAATCCTGGCAACGTGCAGCACACGAGCAGATCAAAAGGACCAGTGATAGAAGAGCTGGACAGTGATGGTGAAGG...
LOC131022042
ATGCAAAGCAACAGAGAAGTGAGAGAGGATTCCAGAGCTGCTGGTAGGCAGTTCGACAGTTCTGGTAGCTTTGGTTTCCCTGACAGCATGTTCTCCAGCATATTCGGAGGGAAGGATCCTTTTGATGATCCTTTCTTTTCCCGGTCCCATGGGAGTTTGTTTGGATCAGACAATGTTAGCTCCGGTAATCCTGGCAACGTGCAGCACACGAGCAGATCAAAAGGACCAGTGATAGAAGAGCTGGACAGTGATGGTGAAGG...

Protein

4 records

下载 Protein FASTA
XP_057807392.1
MQSNREVREDSRAAGRQFDSSGSFGFPDSMFSSIFGGKDPFDDPFFSRSHGSLFGSDNVSSGNPGNVQHTSRSKGPVIEELDSDGEGAPEDEENDAGSASWTNKNPLVEHPDDQGDAHEKSPRKTGDVSSTANQNKVEAKKPLSHSVSFQKVTYGGINGSYYTATTSRRTGGDGVTWEESKQADRTTGQAAHKVSRGIHDKGHSVTRKLGSDGKVATVQTLQNLNEDELDGFEQAWGGIADSHLHSWNNTSDFPRISGIH...
XP_057807393.1
MQSNREVREDSRAAGRQFDSSGSFGFPDSMFSSIFGGKDPFDDPFFSRSHGSLFGSDNVSSGNPGNVQHTSRSKGPVIEELDSDGEGAPEDEENDAGSASWTNKNPLVEHPDDQGDAHEKSPRKTGDVSSTANQNKVEAKKPLSHSVSFQKVTYGGINGSYYTATTSRRTGGDGVTWEESKQADRTTGQAAHKVSRGIHDKGHSVTRKLGSDGKVATVQTLQNLNEDELDGFEQAWGGIADSHLHSWNNTSDFPRISGIH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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