Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001944`

染色体: Chr01 坐标: 34622560-34629149 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001944`
名称	SmilChr01G001944
描述	5'-3' exoribonuclease 3-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	34622560 - 34629149 / `-`

ID 对照

NCBI Gene ID	`LOC131022052`
GeneID	`131022052`
locus_tag	`-`
NCBI Name	`LOC131022052`
原始查询	`LOC131022052`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	5'-3' exoribonuclease 3-like
产物	5'-3' exoribonuclease 3-like
Arabidopsis	`AT1G75660` (XRN3) 5'-3' exoribonuclease 3 [Source:NCBI gene (formerly Entrezgene);Acc:843900] identity=43.6; qcov=0.752; evalue=0; confidence=medium
Rice	`Os01g0872700` (OsXrn3) - identity=43.9; qcov=0.756; evalue=0; confidence=medium
GO	GO:0000956 (nuclear-transcribed mRNA catabolic process); GO:0003723 (RNA binding); GO:0004534 (5'-3' RNA exonuclease activity); GO:0005634 (nucleus)
KEGG	-
Pfam	PF03159 (XRN_N); PF17846 (XRN_M)
InterPro	-
eggNOG	-
NR	GeneID:131022052

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057807412.1`
2	Nucleus	细胞核	0.60000	`XP_057807453.1`
3	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057807412.1`
4	Cytosol	细胞质基质	0.40000	`XP_057807412.1`
5	Chromosome	染色体	0.00000	`XP_057807412.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:34623353`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A2,C39
`Chr1:34623376`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B49,B62
`Chr1:34623410`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr1:34623446`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C71
`Chr1:34623446`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr1:34623455`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:34623495`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr1:34623554`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A2,C39
`Chr1:34623608`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A2,B140,C39,D11,D9
`Chr1:34623643`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B90,B92,D10,D6
`Chr1:34623754`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr1:34623772`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807412.1

1171 aa

586

1171

XRN_N

XRN_M

PF03159 XRN_N 1-236 aa PF17846 XRN_M 328-783 aa

XP_057807419.1

1171 aa

586

1171

XRN_N

XRN_M

PF03159 XRN_N 1-236 aa PF17846 XRN_M 328-783 aa

XP_057807428.1

1167 aa

584

1167

XRN_N

XRN_M

PF03159 XRN_N 1-236 aa PF17846 XRN_M 328-779 aa

XP_057807436.1

1167 aa

584

1167

XRN_N

XRN_M

PF03159 XRN_N 1-236 aa PF17846 XRN_M 328-779 aa

XP_057807444.1

1115 aa

558

1115

XRN_N

XRN_M

PF03159 XRN_N 1-236 aa PF17846 XRN_M 303-727 aa

XP_057807453.1

1111 aa

556

1111

XRN_N

XRN_M

PF03159 XRN_N 1-236 aa PF17846 XRN_M 303-723 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807412.1`	Pfam	`PF03159`	XRN_N	Family	1	236	7.8e-99	330.7	XRN 5'-3' exonuclease N-terminus
`XP_057807412.1`	Pfam	`PF17846`	XRN_M	Domain	328	783	1e-130	437.4	Xrn1 helical domain
`XP_057807419.1`	Pfam	`PF03159`	XRN_N	Family	1	236	7.8e-99	330.7	XRN 5'-3' exonuclease N-terminus
`XP_057807419.1`	Pfam	`PF17846`	XRN_M	Domain	328	783	1e-130	437.4	Xrn1 helical domain
`XP_057807428.1`	Pfam	`PF03159`	XRN_N	Family	1	236	7.7e-99	330.7	XRN 5'-3' exonuclease N-terminus
`XP_057807428.1`	Pfam	`PF17846`	XRN_M	Domain	328	779	1.1e-135	453.8	Xrn1 helical domain
`XP_057807436.1`	Pfam	`PF03159`	XRN_N	Family	1	236	7.7e-99	330.7	XRN 5'-3' exonuclease N-terminus
`XP_057807436.1`	Pfam	`PF17846`	XRN_M	Domain	328	779	1.1e-135	453.8	Xrn1 helical domain
`XP_057807444.1`	Pfam	`PF03159`	XRN_N	Family	1	236	7.2e-99	330.8	XRN 5'-3' exonuclease N-terminus
`XP_057807444.1`	Pfam	`PF17846`	XRN_M	Domain	303	727	2.8e-106	356.9	Xrn1 helical domain
`XP_057807453.1`	Pfam	`PF03159`	XRN_N	Family	1	236	7.1e-99	330.8	XRN 5'-3' exonuclease N-terminus
`XP_057807453.1`	Pfam	`PF17846`	XRN_M	Domain	303	723	3.1e-111	373.2	Xrn1 helical domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057951453.1
CTGCAAGCTATCTTTTCAAGGTTTCGAATAAAGAGAGAAGCAAAATTAAAATTGAAAGAGAGAAAAATACAGAGTAGCAGATTTTGGTGATCAACAATTCTATTAGTACTTAAAAGAGTTTAAGGTTTCAAATAGCGTTTAAAATTACATAAAACTTCACTCACTGTATTTCCAGTTACTTGAAGAATGGGCGTGCCGTCGTTTTACCGGTGGCTGGTCAACAAATATCCCAAAGTTGTAGCCGACGCCACCGGCGGTGG...

XM_057951436.1
CTGCAAGCTATCTTTTCAAGGTTTCGAATAAAGAGAGAAGCAAAATTAAAATTGAAAGAGAGAAAAATACAGAGTAGCAGATTTTGGTGATCAACAATTCTATTAGTACTTAAAAGAGTTTAAGGTTTCAAATAGCGTTTAAAATTACATAAAACTTCACTCACTGTATTTCCAGTTACTTGAAGAATGGGCGTGCCGTCGTTTTACCGGTGGCTGGTCAACAAATATCCCAAAGTTGTAGCCGACGCCACCGGCGGTGG...

CDS

6 records

下载 CDS FASTA

LOC131022052
ATGGGCGTGCCGTCGTTTTACCGGTGGCTGGTCAACAAATATCCCAAAGTTGTAGCCGACGCCACCGGCGGTGGAGGTGAAGGCTTCGATAATCTATACCTCGACATGAATGGACTCATCCATCCTTGCTTCCATCCCGACGATCATCCGTTTCCTCCATCGGCTGTCGACGAGGTGTTTCGGGACATTCACGATTACGTCGACCGTCTCTTCGACATCGTCAAACCTCGTAAACTGTTGTTTATGGCTATTGATGGCGT...

Protein

6 records

下载 Protein FASTA

XP_057807412.1
MGVPSFYRWLVNKYPKVVADATGGGGEGFDNLYLDMNGLIHPCFHPDDHPFPPSAVDEVFRDIHDYVDRLFDIVKPRKLLFMAIDGVAPRAKMNQQRSRRFRSAKDAKIAEELEDRLRKQFENEGRAVLPKEESELFDSNVITPGTQFMHMLSENLRGYIKQRLNENAAWRNVKVILSDDKAPGEGEHKIMSFIRAQRASSQYDPNTKHCLYGLDADLIMLALATHEVHFSILREEVLPPNGELRNGTFQENCGRATTHS...

XP_057807419.1
MGVPSFYRWLVNKYPKVVADATGGGGEGFDNLYLDMNGLIHPCFHPDDHPFPPSAVDEVFRDIHDYVDRLFDIVKPRKLLFMAIDGVAPRAKMNQQRSRRFRSAKDAKIAEELEDRLRKQFENEGRAVLPKEESELFDSNVITPGTQFMHMLSENLRGYIKQRLNENAAWRNVKVILSDDKAPGEGEHKIMSFIRAQRASSQYDPNTKHCLYGLDADLIMLALATHEVHFSILREEVLPPNGELRNGTFQENCGRATTHS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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