当前解析结果
SmilChr04G000128| 统一新 Gene ID | SmilChr04G000128 |
|---|---|
| 名称 | SmilChr04G000128 |
| 描述 | brefeldin A-inhibited guanine nucleotide-exchange protein 2 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 1092123 - 1101303 / + |
| NCBI Gene ID | LOC131022059 |
|---|---|
| GeneID | 131022059 |
| locus_tag | - |
| NCBI Name | LOC131022059 |
| 原始查询 | LOC131022059 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | brefeldin A-inhibited guanine nucleotide-exchange protein 2 |
| 产物 | brefeldin A-inhibited guanine nucleotide-exchange protein 2 |
| Arabidopsis | AT3G60860 (AT3G60860)SEC7-like guanine nucleotide exchange family protein [Source:NCBI gene (formerly Entrezgene);Acc:825257] identity=73.7; qcov=1.01; evalue=0; confidence=high |
| Rice | Os03g0246800- identity=68; qcov=0.401; evalue=0; confidence=low |
| GO | GO:0005085 (guanyl-nucleotide exchange factor activity); GO:0005802 (trans-Golgi network); GO:0032012 (regulation of ARF protein signal transduction) |
| KEGG | smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01369 (Sec7); PF09324 (Sec7-like_HDS); PF12783 (Sec7-like_HUS); PF16206 (Mon2_C); PF16213 (DCB); PF20252 (BIG2_C); PF23325 (TPR_28) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022059 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057807418.1 |
| 2 | Trans-golgi network | Trans-golgi network | 1.00000 | XP_057807418.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057807418.1 |
| 4 | Vacuole | 液泡 | 0.20000 | XP_057807418.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057807418.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:1092411 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:1092555 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:1092639 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:1092711 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B86,C10 |
Chr4:1092758 |
ACG |
A |
2bp_deletion | frameshift_variant | 1 | B3 |
Chr4:1092758 |
ACG |
A |
2bp_deletion | CDS_variant | 1 | B3 |
Chr4:1092875 |
TGC |
T |
2bp_deletion | frameshift_variant | 1 | C52 |
Chr4:1092875 |
TGC |
T |
2bp_deletion | CDS_variant | 1 | C52 |
Chr4:1093220 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,C14,C15 |
Chr4:1093272 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:1093531 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B51 |
Chr4:1093531 |
AT |
A |
1bp_deletion | CDS_variant | 1 | B51 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807418.1PF16213
DCB 6-216 aa
PF12783
Sec7-like_HUS 346-504 aa
PF01369
Sec7 618-799 aa
PF09324
Sec7-like_HDS 1165-1247 aa
PF16206
Mon2_C 1338-1414 aa
PF23325
TPR_28 1340-1463 aa
PF20252
BIG2_C 1568-1765 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807418.1 |
Pfam | PF16213 |
DCB | Repeat | 6 | 216 | 1.2e-34 | 120.3 | Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain |
XP_057807418.1 |
Pfam | PF12783 |
Sec7-like_HUS | Repeat | 346 | 504 | 1.1e-48 | 165.8 | Mon2/Sec7/BIG1-like, HUS domain |
XP_057807418.1 |
Pfam | PF01369 |
Sec7 | Domain | 618 | 799 | 1.3e-77 | 260.3 | Sec7 domain |
XP_057807418.1 |
Pfam | PF09324 |
Sec7-like_HDS | Domain | 1165 | 1247 | 5.6e-31 | 107.0 | Mon2/Sec7/BIG1-like, HDS |
XP_057807418.1 |
Pfam | PF16206 |
Mon2_C | Repeat | 1338 | 1414 | 4.7e-10 | 39.0 | C-terminal region of Mon2 protein |
XP_057807418.1 |
Pfam | PF23325 |
TPR_28 | Repeat | 1340 | 1463 | 3.4e-09 | 37.5 | GBF1-like, tetratrico peptide repeat region |
XP_057807418.1 |
Pfam | PF20252 |
BIG2_C | Domain | 1568 | 1765 | 1.5e-42 | 146.4 | BIG2 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。