Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000129`

染色体: Chr04 坐标: 1101188-1103149 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000129`
名称	SmilChr04G000129
描述	probable calcium-binding protein CML18
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	1101188 - 1103149 / `+`

ID 对照

NCBI Gene ID	`LOC131022060`
GeneID	`131022060`
locus_tag	`-`
NCBI Name	`LOC131022060`
原始查询	`LOC131022060`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable calcium-binding protein CML18
产物	probable calcium-binding protein CML18
Arabidopsis	`AT1G24620` (AT1G24620) EF hand calcium-binding protein family [Source:NCBI gene (formerly Entrezgene);Acc:839076] identity=45.5; qcov=0.837; evalue=8.08e-33; confidence=medium
Rice	`Os01g0135700` (OsCML16) - identity=43.7; qcov=0.946; evalue=2.2e-32; confidence=medium
GO	GO:0005509 (calcium ion binding)
KEGG	-
Pfam	PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:131022060

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807420.1`
2	Cytoplasm	细胞质	0.80000	`XP_057807421.1`
3	Cytosol	细胞质基质	0.40000	`XP_057807420.1`
4	Chromosome	染色体	0.00000	`XP_057807420.1`
5	Centromere	着丝粒	0.00000	`XP_057807420.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:1101276`	`G`	`GA`	1bp_insertion	frameshift_variant	4	B110,B23,C22,C49
`Chr4:1101276`	`G`	`GA`	1bp_insertion	CDS_variant	4	B110,B23,C22,C49
`Chr4:1102355`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,B115,C12,D1
`Chr4:1102469`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:1102473`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:1102500`	`TC`	`T`	1bp_deletion	frameshift_variant	3	B102,C25,C33
`Chr4:1102500`	`TC`	`T`	1bp_deletion	CDS_variant	3	B102,C25,C33
`Chr4:1102538`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C24
`Chr4:1102538`	`GA`	`G`	1bp_deletion	CDS_variant	1	C24
`Chr4:1102668`	`G`	`GGC`	2bp_insertion	frameshift_variant	2	B133,C59
`Chr4:1102668`	`G`	`GGC`	2bp_insertion	CDS_variant	2	B133,C59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807420.1

226 aa

113

226

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_1

EF-hand_8

EF-hand_5

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

PF13499 EF-hand_7 73-134 aa PF13405 EF-hand_6 74-103 aa PF13202 EF-hand_5 75-99 aa PF00036 EF-hand_1 75-100 aa PF13833 EF-hand_8 87-136 aa PF13202 EF-hand_5 118-136 aa PF13499 EF-hand_7 158-220 aa PF13405 EF-hand_6 162-188 aa PF13202 EF-hand_5 163-183 aa PF13833 EF-hand_8 172-222 aa PF00036 EF-hand_1 196-222 aa PF13202 EF-hand_5 204-221 aa

XP_057807421.1

184 aa

184

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_1

EF-hand_8

EF-hand_5

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

PF13499 EF-hand_7 31-92 aa PF13405 EF-hand_6 32-61 aa PF13202 EF-hand_5 33-57 aa PF00036 EF-hand_1 33-58 aa PF13833 EF-hand_8 67-95 aa PF13202 EF-hand_5 76-94 aa PF13499 EF-hand_7 116-178 aa PF13405 EF-hand_6 120-146 aa PF13202 EF-hand_5 121-142 aa PF13833 EF-hand_8 130-180 aa PF00036 EF-hand_1 154-180 aa PF13202 EF-hand_5 162-179 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807420.1`	Pfam	`PF13499`	EF-hand_7	Domain	73	134	1.3e-27	96.7	EF-hand domain pair
`XP_057807420.1`	Pfam	`PF13405`	EF-hand_6	Domain	74	103	2.8e-23	80.1	EF-hand domain
`XP_057807420.1`	Pfam	`PF13202`	EF-hand_5	Domain	75	99	2e-23	81.4	EF hand
`XP_057807420.1`	Pfam	`PF00036`	EF-hand_1	Domain	75	100	1.5e-27	93.8	EF hand domain
`XP_057807420.1`	Pfam	`PF13833`	EF-hand_8	Domain	87	136	2e-15	57.0	EF-hand domain pair
`XP_057807420.1`	Pfam	`PF13202`	EF-hand_5	Domain	118	136	2e-23	81.4	EF hand
`XP_057807420.1`	Pfam	`PF13499`	EF-hand_7	Domain	158	220	1.3e-27	96.7	EF-hand domain pair
`XP_057807420.1`	Pfam	`PF13405`	EF-hand_6	Domain	162	188	2.8e-23	80.1	EF-hand domain
`XP_057807420.1`	Pfam	`PF13202`	EF-hand_5	Domain	163	183	2e-23	81.4	EF hand
`XP_057807420.1`	Pfam	`PF13833`	EF-hand_8	Domain	172	222	2e-15	57.0	EF-hand domain pair
`XP_057807420.1`	Pfam	`PF00036`	EF-hand_1	Domain	196	222	1.5e-27	93.8	EF hand domain
`XP_057807420.1`	Pfam	`PF13202`	EF-hand_5	Domain	204	221	2e-23	81.4	EF hand
`XP_057807421.1`	Pfam	`PF13499`	EF-hand_7	Domain	31	92	6.2e-28	97.7	EF-hand domain pair
`XP_057807421.1`	Pfam	`PF13405`	EF-hand_6	Domain	32	61	1.3e-23	81.1	EF-hand domain
`XP_057807421.1`	Pfam	`PF13202`	EF-hand_5	Domain	33	57	5.4e-24	83.2	EF hand
`XP_057807421.1`	Pfam	`PF00036`	EF-hand_1	Domain	33	58	4.8e-28	95.3	EF hand domain
`XP_057807421.1`	Pfam	`PF13833`	EF-hand_8	Domain	67	95	1.1e-15	57.9	EF-hand domain pair
`XP_057807421.1`	Pfam	`PF13202`	EF-hand_5	Domain	76	94	5.4e-24	83.2	EF hand
`XP_057807421.1`	Pfam	`PF13499`	EF-hand_7	Domain	116	178	6.2e-28	97.7	EF-hand domain pair
`XP_057807421.1`	Pfam	`PF13405`	EF-hand_6	Domain	120	146	1.3e-23	81.1	EF-hand domain
`XP_057807421.1`	Pfam	`PF13202`	EF-hand_5	Domain	121	142	5.4e-24	83.2	EF hand
`XP_057807421.1`	Pfam	`PF13833`	EF-hand_8	Domain	130	180	1.1e-15	57.9	EF-hand domain pair
`XP_057807421.1`	Pfam	`PF00036`	EF-hand_1	Domain	154	180	4.8e-28	95.3	EF hand domain
`XP_057807421.1`	Pfam	`PF13202`	EF-hand_5	Domain	162	179	5.4e-24	83.2	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951437.1
CGATGAGTTTATAGGAGCTGGAGTGTTGTATCATTCATGTATGCCTTAGCTGTGCTGCTCCATTTTCAGATCAAATGGTTTTTGAGAAGAAAAAGAAAATCTCATTCTGCAACAAATCTACTTTGAAAATTTCACGAGATTCTGCAAAACAATGTCTGATCTCTCAGCTCCGGCGAGGGAGAGATCACCTCGCAAAGGTGATGAACTTCTCAAGAAAGCCAACCATTTTCAAGAAAGTGGAAACGAGTGGCAGAGGTTGG...

XM_057951438.1
GTCGTGATTGCTGTCTGAAACTGTTAAAATATAGATTTTGCTTCTTGCAATATTTTGCCAATTGATGTTTTTTTATTGCTGCGTTAATGTAAAGACGAATAGCCGGCATTCTGGCTTAGTTTTCTACTCCATCTTGTATACTTTTATTTAAATTGTTGGAGCGGCCACATGGTATAATACTCCCTCCGTCTCCCGAATAACTTTCTAAGAGGGAGGGATGCAGATTTCAAGATAAAGTTGTTGAGTGTATTGGAAGTGGT...

CDS

2 records

下载 CDS FASTA

LOC131022060
ATGGTTTTTGAGAAGAAAAAGAAAATCTCATTCTGCAACAAATCTACTTTGAAAATTTCACGAGATTCTGCAAAACAATGTCTGATCTCTCAGCTCCGGCGAGGGAGAGATCACCTCGCAAAGGTGATGAACTTCTCAAGAAAGCCAACCATTTTCAAGAAAGTGGAAACGAGTGGCAGAGGTTGGAGACTAACTTTTGCAGCCATGGAGGCTTCAAGCCAGCTGAAGCAAGTGTTCAAGCTCATGGACGCCGACGGCGA...

LOC131022060
ATGAACTTCTCAAGAAAGCCAACCATTTTCAAGAAAGTGGAAACGAGTGGCAGAGGTTGGAGACTAACTTTTGCAGCCATGGAGGCTTCAAGCCAGCTGAAGCAAGTGTTCAAGCTCATGGACGCCGACGGCGACGGCAAGCTCTCGCCGTCGGAGCTCAGGCGGGTGCTCCTGAGCTTGGGGCACGAGAGGGGCGAGGCGGCCAGGGAGGCCGAGGGGATAGTGAGGGAGATGGACCGCGATGGCGATGGGCTCGTCGA...

Protein

2 records

下载 Protein FASTA

XP_057807420.1
MVFEKKKKISFCNKSTLKISRDSAKQCLISQLRRGRDHLAKVMNFSRKPTIFKKVETSGRGWRLTFAAMEASSQLKQVFKLMDADGDGKLSPSELRRVLLSLGHERGEAAREAEGIVREMDRDGDGLVDLDEFMVVVGSDDDGDGDGDGDGKGVSRESVMMGAFGVFDANGDGLISAEELRSVLARLGCGRCSGRECRKMIEGVDRDGDGFVSFEEFKVMMNAGYY

XP_057807421.1
MNFSRKPTIFKKVETSGRGWRLTFAAMEASSQLKQVFKLMDADGDGKLSPSELRRVLLSLGHERGEAAREAEGIVREMDRDGDGLVDLDEFMVVVGSDDDGDGDGDGDGKGVSRESVMMGAFGVFDANGDGLISAEELRSVLARLGCGRCSGRECRKMIEGVDRDGDGFVSFEEFKVMMNAGYY

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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