Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000133`

染色体: Chr04 坐标: 1144833-1150580 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000133`
名称	SmilChr04G000133
描述	uncharacterized SmilChr04G000133
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	1144833 - 1150580 / `-`

ID 对照

NCBI Gene ID	`LOC131022064`
GeneID	`131022064`
locus_tag	`-`
NCBI Name	`LOC131022064`
原始查询	`LOC131022064`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SMAD/FHA domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819154]; symbol=AT2G45460; hit=AT2G45460; species=arabidopsis; confidence=high
产物	SMAD/FHA domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819154]; symbol=AT2G45460; hit=AT2G45460; species=arabidopsis; confidence=high
Arabidopsis	`AT2G45460` (AT2G45460) SMAD/FHA domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819154] identity=49.3; qcov=0.966; evalue=0; confidence=high
Rice	`Os03g0127600` - identity=45.1; qcov=0.982; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00498 (FHA)
InterPro	-
eggNOG	-
NR	GeneID:131022064

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807425.1`
2	Chromosome	染色体	0.20000	`XP_057807425.1`
3	Nucleoplasm	核质	0.20000	`XP_057807425.1`
4	Nucleus membrane	核膜	0.20000	`XP_057807425.1`
5	Phragmoplast	Phragmoplast	0.20000	`XP_057807425.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:1145022`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr4:1145035`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B24,B56,B96
`Chr4:1145222`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A7,B17,C17,C83
`Chr4:1145265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:1145268`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B138,C15
`Chr4:1145465`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:1145786`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:1145879`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr4:1146003`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:1146102`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:1146624`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr4:1146836`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,A9,B70,B73,C3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807425.1

921 aa

460

921

FHA

PF00498 FHA 101-178 aa

XP_057807426.1

920 aa

460

920

FHA

PF00498 FHA 101-178 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807425.1`	Pfam	`PF00498`	FHA	Family	101	178	1.2e-09	39.2	FHA domain
`XP_057807426.1`	Pfam	`PF00498`	FHA	Family	101	178	1.2e-09	39.2	FHA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951442.1
ATAAATAAATTTACCCCTCAGCTTCCTCAATACGCTAAAACCCAGAGCTATAGAAATAGAATTAGGGTTTTCAAAATCCGCGCCATAATCGAAGCCCTTTTCACACACACTCGGCGAATGGCTGACGAAGACGAGAGCTCGTCAACCCCGCGGCCCGAGAAGCCCAGTCCGAGCCCGCACTCGGCCCGAAAGTCTCCCTCCATGCCTCGTCCCGGCTTCGGCGACAACGGCAGTAATTCTCCGCTTTCAAAAAATCCGAA...

XM_057951443.1
GCTTCCTCAATACGCTAAAACCCAGAGCTATAGAAATAGAATTAGGGTTTTCAAAATCCGCGCCATAATCGAAGCCCTTTTCACACACACTCGGCGAATGGCTGACGAAGACGAGAGCTCGTCAACCCCGCGGCCCGAGAAGCCCAGTCCGAGCCCGCACTCGGCCCGAAAGTCTCCCTCCATGCCTCGTCCCGGCTTCGGCGACAACGGCAGTAATTCTCCGCTTTCAAAAAATCCGAAGAGCTCTGAAGAGTTCATAT...

CDS

2 records

下载 CDS FASTA

LOC131022064
ATGGCTGACGAAGACGAGAGCTCGTCAACCCCGCGGCCCGAGAAGCCCAGTCCGAGCCCGCACTCGGCCCGAAAGTCTCCCTCCATGCCTCGTCCCGGCTTCGGCGACAACGGCAGTAATTCTCCGCTTTCAAAAAATCCGAAGAGCTCTGAAGAGTTCATATCATCGGCGGCGGCCAAAATTGCCGCGCAGCCGCTTCAGTACGCCGATCCCGATGTTTGGGGAGTGCTCACTGCCATATCTGAGAAGGCGCGCAAGCG...

Protein

2 records

下载 Protein FASTA

XP_057807425.1
MADEDESSSTPRPEKPSPSPHSARKSPSMPRPGFGDNGSNSPLSKNPKSSEEFISSAAAKIAAQPLQYADPDVWGVLTAISEKARKRNQGMNMLLTSNEHCIGRLVDDARFQIITPAVSAIHCKIYRKKIATGDTEQQSASCSAFLKDSSTNGTYLNWEKLNKNSFEAKLRHGDIISIAFVPHHELAFAFVYREIQKSSCATDGGSLKRKPEEYCAENKRLKGIGIGASDGPLSLDDFRSLQRSNMELRKQLEDQVATVE...

XP_057807426.1
MADEDESSSTPRPEKPSPSPHSARKSPSMPRPGFGDNGSNSPLSKNPKSSEEFISSAAAKIAAQPLQYADPDVWGVLTAISEKARKRNQGMNMLLTSNEHCIGRLVDDARFQIITPAVSAIHCKIYRKKIATGDTEQQSASCSAFLKDSSTNGTYLNWEKLNKNSFEAKLRHGDIISIAFVPHHELAFAFVYREIQKSSCATDGGSLKRKPEEYCAENKRLKGIGIGASDGPLSLDDFRSLQRSNMELRKQLEDQVATVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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