当前解析结果
SmilChr04G000137| 统一新 Gene ID | SmilChr04G000137 |
|---|---|
| 名称 | SmilChr04G000137 |
| 描述 | phenolic glucoside malonyltransferase 1-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 1175889 - 1178517 / + |
| NCBI Gene ID | LOC131022068 |
|---|---|
| GeneID | 131022068 |
| locus_tag | - |
| NCBI Name | LOC131022068 |
| 原始查询 | LOC131022068 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phenolic glucoside malonyltransferase 1-like |
| 产物 | phenolic glucoside malonyltransferase 1-like |
| Arabidopsis | AT3G29670 (PMAT2)HXXXD-type acyl-transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822645] identity=34; qcov=1.03; evalue=2.7e-75; confidence=low |
| Rice | Os02g0820400- identity=34.4; qcov=0.963; evalue=1.93e-70; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF02458 (Transferase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022068 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057807431.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057807431.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057807431.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807431.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807431.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:1176425 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A16,B117,B62,B68 |
Chr4:1176465 |
ACT |
A |
2bp_deletion | frameshift_variant | 4 | B108,B19,C2,C49 |
Chr4:1176465 |
ACT |
A |
2bp_deletion | CDS_variant | 4 | B108,B19,C2,C49 |
Chr4:1176480 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B114,B91,C39 |
Chr4:1176653 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A4,B51,D9 |
Chr4:1176754 |
AGG |
A |
2bp_deletion | frameshift_variant | 19 | A15,B1,B102,B103,B114,B119,B126,B17,B18,B33,B35,B41,B78,B86,C27,C31,C39,C65,D2 |
Chr4:1176755 |
GGC |
G |
2bp_deletion | frameshift_variant | 25 | A21,B101,B106,B118,B137,B2,B25,B42,B43,B5,B60,B71,B77,B8,C11,C21,C37,C45,C62,C7,C74,C75,C78,C79,C82 |
Chr4:1176766 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,B53 |
Chr4:1176823 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B103,B25,B33,C21,C78 |
Chr4:1176833 |
T |
TCA |
2bp_insertion | frameshift_variant | 1 | B33 |
Chr4:1176833 |
T |
TCA |
2bp_insertion | CDS_variant | 1 | B33 |
Chr4:1176847 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057807431.1PF02458
Transferase 13-457 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807431.1 |
Pfam | PF02458 |
Transferase | Family | 13 | 457 | 4e-44 | 151.7 | Transferase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。