Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000153`

染色体: Chr04 坐标: 1333843-1339955 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000153`
名称	SmilChr04G000153
描述	aspartic proteinase-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	1333843 - 1339955 / `+`

ID 对照

NCBI Gene ID	`LOC131022083`
GeneID	`131022083`
locus_tag	`-`
NCBI Name	`LOC131022083`
原始查询	`LOC131022083`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	aspartic proteinase-like
产物	aspartic proteinase-like
Arabidopsis	`AT1G11910` (APA1) aspartic proteinase A1 [Source:NCBI gene (formerly Entrezgene);Acc:837740] identity=63.5; qcov=0.966; evalue=0; confidence=high
Rice	`Os05g0137400` (OsAP1) - identity=59.4; qcov=1; evalue=0; confidence=high
GO	GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis); GO:0006629 (lipid metabolic process)
KEGG	-
Pfam	PF00026 (Asp); PF03489 (SapB_2); PF05184 (SapB_1); PF14543 (TAXi_N)
InterPro	-
eggNOG	-
NR	GeneID:131022083

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057807455.1`
2	Secreted	分泌到胞外	0.20000	`XP_057807455.1`
3	Nucleus	细胞核	0.00000	`XP_057807455.1`
4	Chromosome	染色体	0.00000	`XP_057807455.1`
5	Centromere	着丝粒	0.00000	`XP_057807455.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:1335350`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B125,B139,B94
`Chr4:1335351`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B125,B139,B94
`Chr4:1335415`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A18,B125,B139,B94
`Chr4:1336595`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B42,B43,C80
`Chr4:1336791`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr4:1336980`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr4:1337491`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr4:1337663`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:1339697`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B114,B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807455.1

504 aa

252

504

Asp

TAXi_N

SapB_2

SapB_1

PF00026 Asp 81-502 aa PF14543 TAXi_N 82-239 aa PF03489 SapB_2 316-348 aa PF05184 SapB_1 377-413 aa

XP_057807456.1

504 aa

252

504

Asp

TAXi_N

SapB_2

SapB_1

PF00026 Asp 81-502 aa PF14543 TAXi_N 82-239 aa PF03489 SapB_2 316-348 aa PF05184 SapB_1 377-413 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807455.1`	Pfam	`PF00026`	Asp	Domain	81	502	5.5e-116	388.1	Eukaryotic aspartyl protease
`XP_057807455.1`	Pfam	`PF14543`	TAXi_N	Domain	82	239	2e-13	51.6	Xylanase inhibitor N-terminal
`XP_057807455.1`	Pfam	`PF03489`	SapB_2	Family	316	348	2.2e-14	54.0	Saposin-like type B, region 2
`XP_057807455.1`	Pfam	`PF05184`	SapB_1	Domain	377	413	5.2e-09	36.6	Saposin-like type B, region 1
`XP_057807456.1`	Pfam	`PF00026`	Asp	Domain	81	502	5.5e-116	388.1	Eukaryotic aspartyl protease
`XP_057807456.1`	Pfam	`PF14543`	TAXi_N	Domain	82	239	2e-13	51.6	Xylanase inhibitor N-terminal
`XP_057807456.1`	Pfam	`PF03489`	SapB_2	Family	316	348	2.2e-14	54.0	Saposin-like type B, region 2
`XP_057807456.1`	Pfam	`PF05184`	SapB_1	Domain	377	413	5.2e-09	36.6	Saposin-like type B, region 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951472.1
TTAGCTAAGAAAATATCTACTCCATTAAATATTCAGCTAACTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCCATTTATGTTGGACTGCACAAAGTCTACAAGCTTCTATATAACTTGAAAGACTTTCATCACTTCATCTGCTCTTGAAGCTCTGGATTAACAAGGCAATCTTGAAACATGAAGCTCGGCTATCTGCTAACCGTATTCTGTCTGTGGGCCGTTGTATGTTCCCTCCTTCCTTCTTCTGATGCTCTGAGAAG...

XM_057951473.1
TTATGTTGGACTGCACAAAGTCTACAAGCTTCTATATAACTTGAAAGACTTTCATCACTTCATCTGCTCTTGAAGCTCTGGATTAACAAGGTTTGAAATCCAATCTTCTTCCTTCCCGATCATCCATTTCGTGAAAACTTCTCAATCATCTATCTATGTTATTCTATCACAAGCAGCCTTTACTTTGTTCTGTTTGCTTTTACACTGGTTGAGTTGAGCTCGAGCTTGCAAACAGCGATGTTTCTTTTCCGATTTTTTTT...

CDS

2 records

下载 CDS FASTA

LOC131022083
ATGAAGCTCGGCTATCTGCTAACCGTATTCTGTCTGTGGGCCGTTGTATGTTCCCTCCTTCCTTCTTCTGATGCTCTGAGAAGAGTTAGCCTGAAAAGGAGGCCTTTGGATCTGGCTAGGATTAAGGCTGCTGTAGAAGCTAAATTGGAGGGAAAGCTTGGGATAGATGTCAATGACAGACAGATCAAACTAGGTAGTGCAGATGGAGATGCGGTGTATCTGAAGAATTACTTGGATGCTCAATACTTTGGAGAGATCGG...

Protein

2 records

下载 Protein FASTA

XP_057807455.1
MKLGYLLTVFCLWAVVCSLLPSSDALRRVSLKRRPLDLARIKAAVEAKLEGKLGIDVNDRQIKLGSADGDAVYLKNYLDAQYFGEIGIGSPPQNFTVVFDTGSSNLWVPSSKCYFSIACYFHSRYKSSKSSTYTANGKSCSIAYGSGSIAGFFSQDNVQVGDVVVKDQVFIEATKEGSLTFVVAKFDGILGLGFQEISVGDAVPVWYNMVNQGLVEEQLFSFWLSSDPEAEVGGEIIFGGVDPNHYKGNHSYVPVTEKGY...

XP_057807456.1
MKLGYLLTVFCLWAVVCSLLPSSDALRRVSLKRRPLDLARIKAAVEAKLEGKLGIDVNDRQIKLGSADGDAVYLKNYLDAQYFGEIGIGSPPQNFTVVFDTGSSNLWVPSSKCYFSIACYFHSRYKSSKSSTYTANGKSCSIAYGSGSIAGFFSQDNVQVGDVVVKDQVFIEATKEGSLTFVVAKFDGILGLGFQEISVGDAVPVWYNMVNQGLVEEQLFSFWLSSDPEAEVGGEIIFGGVDPNHYKGNHSYVPVTEKGY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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