当前解析结果
SmilChr04G000155| 统一新 Gene ID | SmilChr04G000155 |
|---|---|
| 名称 | SmilChr04G000155 |
| 描述 | beta-glucosidase 42 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 1353050 - 1359412 / + |
| NCBI Gene ID | LOC131022085 |
|---|---|
| GeneID | 131022085 |
| locus_tag | - |
| NCBI Name | LOC131022085 |
| 原始查询 | LOC131022085 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-glucosidase 42 |
| 产物 | beta-glucosidase 42 |
| Arabidopsis | AT5G36890 (BGLU42)beta glucosidase 42 [Source:NCBI gene (formerly Entrezgene);Acc:833656] identity=66; qcov=0.94; evalue=0; confidence=high |
| Rice | Os01g0897600 (Os1bglu4)- identity=63.8; qcov=0.934; evalue=0; confidence=high |
| GO | GO:0005975 (carbohydrate metabolic process); GO:0008422 (beta-glucosidase activity) |
| KEGG | smil00460 (Cyanoamino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00232 (Glyco_hydro_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022085 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057807459.1 |
| 2 | Peroxisome | 过氧化物酶体 | 0.60000 | XP_057807459.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057807459.1 |
| 4 | Chloroplast | 叶绿体 | 0.20000 | XP_057807459.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057807459.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:1353454 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | C13 |
Chr4:1353454 |
CT |
C |
1bp_deletion | CDS_variant | 1 | C13 |
Chr4:1353479 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,B107,B46,B69,B93 |
Chr4:1354322 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B107,B46,B69,B93 |
Chr4:1354339 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B82,C32,C68,C73 |
Chr4:1354435 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
Chr4:1354901 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B23,C50,C51,C81,C83 |
Chr4:1355526 |
TA |
T |
1bp_deletion | frameshift_variant | 2 | B114,B59 |
Chr4:1355526 |
TA |
T |
1bp_deletion | CDS_variant | 2 | B114,B59 |
Chr4:1356409 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr4:1356562 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr4:1356677 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,B82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057807459.1PF00232
Glyco_hydro_1 34-494 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807459.1 |
Pfam | PF00232 |
Glyco_hydro_1 | Domain | 34 | 494 | 4.5e-168 | 560.2 | Glycosyl hydrolase family 1 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。