Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000156`

染色体: Chr04 坐标: 1360728-1364032 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000156`
名称	SmilChr04G000156
描述	pentatricopeptide repeat-containing protein At5g66520-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	1360728 - 1364032 / `-`

ID 对照

NCBI Gene ID	`LOC131022086`
GeneID	`131022086`
locus_tag	`-`
NCBI Name	`LOC131022086`
原始查询	`LOC131022086`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At5g66520-like
产物	pentatricopeptide repeat-containing protein At5g66520-like
Arabidopsis	`AT5G66520` (AT5G66520) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836784] identity=42.7; qcov=0.945; evalue=0; confidence=medium
Rice	`Os01g0176300` - identity=43.6; qcov=0.857; evalue=2.44e-165; confidence=medium
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF17177 (PPR_long); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131022086

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057807460.1`
2	Chloroplast	叶绿体	0.40000	`XP_057807460.1`
3	Nucleus	细胞核	0.00000	`XP_057807460.1`
4	Chromosome	染色体	0.00000	`XP_057807460.1`
5	Centromere	着丝粒	0.00000	`XP_057807460.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:1360922`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr4:1360929`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B125,C82
`Chr4:1361175`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr4:1361217`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,A19,B102,B132,C4
`Chr4:1361257`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr4:1361265`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr4:1361448`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr4:1361466`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr4:1361495`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:1361555`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:1361664`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,A19,B102,B132,C4
`Chr4:1361669`	`TGG`	`T`	2bp_deletion	frameshift_variant	1	B58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807460.1

635 aa

318

635

PPR_long

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_3

PPR

PPR_2

PPR_3

PPR

E_motif

PPR

DYW_deaminase

PF17177 PPR_long 135-278 aa PF01535 PPR 170-196 aa PF12854 PPR_1 195-223 aa PF13041 PPR_2 195-228 aa PF01535 PPR 198-227 aa PF13812 PPR_3 227-274 aa PF13041 PPR_2 228-274 aa PF01535 PPR 230-258 aa PF13812 PPR_3 289-328 aa PF01535 PPR 301-327 aa PF13041 PPR_2 328-375 aa PF13812 PPR_3 329-375 aa PF01535 PPR 330-360 aa PF01535 PPR 402-426 aa PF20431 E_motif 445-506 aa PF01535 PPR 469-497 aa PF14432 DYW_deaminase 543-635 aa

XP_057807461.1

635 aa

318

635

PPR_long

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_3

PPR

PPR_2

PPR_3

PPR

E_motif

PPR

DYW_deaminase

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807460.1`	Pfam	`PF17177`	PPR_long	Repeat	135	278	1.7e-15	57.7	Pentacotripeptide-repeat region of PRORP
`XP_057807460.1`	Pfam	`PF01535`	PPR	Repeat	170	196	7.7e-53	173.8	PPR repeat
`XP_057807460.1`	Pfam	`PF12854`	PPR_1	Repeat	195	223	3.5e-28	97.7	PPR repeat
`XP_057807460.1`	Pfam	`PF13041`	PPR_2	Repeat	195	228	4.9e-62	206.6	PPR repeat family
`XP_057807460.1`	Pfam	`PF01535`	PPR	Repeat	198	227	7.7e-53	173.8	PPR repeat
`XP_057807460.1`	Pfam	`PF13812`	PPR_3	Repeat	227	274	1.2e-27	96.4	Pentatricopeptide repeat domain
`XP_057807460.1`	Pfam	`PF13041`	PPR_2	Repeat	228	274	4.9e-62	206.6	PPR repeat family
`XP_057807460.1`	Pfam	`PF01535`	PPR	Repeat	230	258	7.7e-53	173.8	PPR repeat
`XP_057807460.1`	Pfam	`PF13812`	PPR_3	Repeat	289	328	1.2e-27	96.4	Pentatricopeptide repeat domain
`XP_057807460.1`	Pfam	`PF01535`	PPR	Repeat	301	327	7.7e-53	173.8	PPR repeat
`XP_057807460.1`	Pfam	`PF13041`	PPR_2	Repeat	328	375	4.9e-62	206.6	PPR repeat family
`XP_057807460.1`	Pfam	`PF13812`	PPR_3	Repeat	329	375	1.2e-27	96.4	Pentatricopeptide repeat domain
`XP_057807460.1`	Pfam	`PF01535`	PPR	Repeat	330	360	7.7e-53	173.8	PPR repeat
`XP_057807460.1`	Pfam	`PF01535`	PPR	Repeat	402	426	7.7e-53	173.8	PPR repeat
`XP_057807460.1`	Pfam	`PF20431`	E_motif	Repeat	445	506	4.8e-20	72.3	E motif
`XP_057807460.1`	Pfam	`PF01535`	PPR	Repeat	469	497	7.7e-53	173.8	PPR repeat
`XP_057807460.1`	Pfam	`PF14432`	DYW_deaminase	Domain	543	635	1.9e-39	134.1	DYW family of nucleic acid deaminases
`XP_057807461.1`	Pfam	`PF17177`	PPR_long	Repeat	135	278	1.7e-15	57.7	Pentacotripeptide-repeat region of PRORP
`XP_057807461.1`	Pfam	`PF01535`	PPR	Repeat	170	196	7.7e-53	173.8	PPR repeat
`XP_057807461.1`	Pfam	`PF12854`	PPR_1	Repeat	195	223	3.5e-28	97.7	PPR repeat
`XP_057807461.1`	Pfam	`PF13041`	PPR_2	Repeat	195	228	4.9e-62	206.6	PPR repeat family
`XP_057807461.1`	Pfam	`PF01535`	PPR	Repeat	198	227	7.7e-53	173.8	PPR repeat
`XP_057807461.1`	Pfam	`PF13812`	PPR_3	Repeat	227	274	1.2e-27	96.4	Pentatricopeptide repeat domain
`XP_057807461.1`	Pfam	`PF13041`	PPR_2	Repeat	228	274	4.9e-62	206.6	PPR repeat family
`XP_057807461.1`	Pfam	`PF01535`	PPR	Repeat	230	258	7.7e-53	173.8	PPR repeat
`XP_057807461.1`	Pfam	`PF13812`	PPR_3	Repeat	289	328	1.2e-27	96.4	Pentatricopeptide repeat domain
`XP_057807461.1`	Pfam	`PF01535`	PPR	Repeat	301	327	7.7e-53	173.8	PPR repeat
`XP_057807461.1`	Pfam	`PF13041`	PPR_2	Repeat	328	375	4.9e-62	206.6	PPR repeat family
`XP_057807461.1`	Pfam	`PF13812`	PPR_3	Repeat	329	375	1.2e-27	96.4	Pentatricopeptide repeat domain
`XP_057807461.1`	Pfam	`PF01535`	PPR	Repeat	330	360	7.7e-53	173.8	PPR repeat
`XP_057807461.1`	Pfam	`PF01535`	PPR	Repeat	402	426	7.7e-53	173.8	PPR repeat
`XP_057807461.1`	Pfam	`PF20431`	E_motif	Repeat	445	506	4.8e-20	72.3	E motif
`XP_057807461.1`	Pfam	`PF01535`	PPR	Repeat	469	497	7.7e-53	173.8	PPR repeat
`XP_057807461.1`	Pfam	`PF14432`	DYW_deaminase	Domain	543	635	1.9e-39	134.1	DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951477.1
ATACTTGTAAATTAATTTCAACCTTTCATAATCCGTTGCGTCTCTCCCGCTCTCGCCACCGTGCTGCAACGAGCACCGCCGTCTCCAGCCCACATCTTTCAGCCGCGATTATCCCCTTTTCTCTTAAATCTCCACATTATGATACAGCAACAAATTTCCTCCTTTCCAGGATGTAGATCCCTTTGAAGTGTAAAAGGTTGTGTTTTGAAGTTTAAATTAACAATTTGAAAGCTGCTATGGTTTGTGCCCTACCCTCTATA...

XM_057951478.1
ATACTTGTAAATTAATTTCAACCTTTCATAATCCGTTGCGTCTCTCCCGCTCTCGCCACCGTGCTGCAACGAGCACCGCCGTCTCCAGCCCACATCTTTCAGCCGCGATTATCCCCTTTTCTCTTAAATCTCCACATTATGATACAGCAACAAATTTCCTCCTTTCCAGGTTCAAGGATTTTGGATGTAGATCCCTTTGAAGTGTAAAAGGTTGTGTTTTGAAGTTTAAATTAACAATTTGAAAGCTGCTATGGTTTGTG...

CDS

2 records

下载 CDS FASTA

LOC131022086
ATGGTTTGTGCCCTACCCTCTATATCGTGTTGTACGATTTCTTCCTTGACCATTGAAAAAAGACAAAGCTTACAAAGTTCACCAAAGTCCTCTTTGGGAACTTTGGAAACACAGCTATTGCATAAGTTTAACTCCGTATCTGAGCTCAAAATAGTGCATTCTCTTCTCATCAAATCCGGCACACCTCTCTCAGAACTCCCACTATCCCGTGTAGCCTCAGTTTGTGCTCTTACTCCCAGTTTTCTCTATGCTCAACGAAT...

Protein

2 records

下载 Protein FASTA

XP_057807460.1
MVCALPSISCCTISSLTIEKRQSLQSSPKSSLGTLETQLLHKFNSVSELKIVHSLLIKSGTPLSELPLSRVASVCALTPSFLYAQRIFQQVGQPEIVTWNCCLRDFAESDTPFNAILLFHQLQRHNVCPDSFTCSFVLKACVKLMDLSHGRIIHALVVKLDLLVNLVLQNVILHLYASCGEMSDAILLFDKMSQRDIVTWNTMITQLVKKGDIDSAYKMFSEMPDRNLRSWTAMIAGFVRCRKPKKAIDIFKEMEQVGLK...

XP_057807461.1
MVCALPSISCCTISSLTIEKRQSLQSSPKSSLGTLETQLLHKFNSVSELKIVHSLLIKSGTPLSELPLSRVASVCALTPSFLYAQRIFQQVGQPEIVTWNCCLRDFAESDTPFNAILLFHQLQRHNVCPDSFTCSFVLKACVKLMDLSHGRIIHALVVKLDLLVNLVLQNVILHLYASCGEMSDAILLFDKMSQRDIVTWNTMITQLVKKGDIDSAYKMFSEMPDRNLRSWTAMIAGFVRCRKPKKAIDIFKEMEQVGLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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