Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000170`

染色体: Chr04 坐标: 1516948-1526707 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000170`
名称	SmilChr04G000170
描述	dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	1516948 - 1526707 / `+`

ID 对照

NCBI Gene ID	`LOC131022098`
GeneID	`131022098`
locus_tag	`-`
NCBI Name	`LOC131022098`
原始查询	`LOC131022098`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase
产物	dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1%2C6-mannosyltransferase
Arabidopsis	`AT1G02145` (ALG12) homolog of asparagine-linked glycosylation 12 [Source:NCBI gene (formerly Entrezgene);Acc:5007658] identity=67.1; qcov=0.992; evalue=0; confidence=high
Rice	`Os04g0544900` - identity=61.9; qcov=0.994; evalue=0; confidence=high
GO	GO:0000009 (alpha-1,6-mannosyltransferase activity); GO:0005789 (endoplasmic reticulum membrane); GO:0006487 (protein N-linked glycosylation)
KEGG	smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00513 (Various types of N-glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF03901 (Glyco_transf_22)
InterPro	-
eggNOG	-
NR	GeneID:131022098

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057807477.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057807477.1`
3	Nucleus	细胞核	0.00000	`XP_057807477.1`
4	Chromosome	染色体	0.00000	`XP_057807477.1`
5	Centromere	着丝粒	0.00000	`XP_057807477.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:1518998`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B23,B93,C30
`Chr4:1519893`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr4:1523387`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,A21,B1,C7,C82
`Chr4:1523873`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B62,C39,C77
`Chr4:1524640`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:1524642`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:1524673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr4:1525295`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr4:1525345`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B6,C67
`Chr4:1525537`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807477.1

494 aa

247

494

Glyco_transf_22

PF03901 Glyco_transf_22 25-381 aa

XP_057807478.1

494 aa

247

494

Glyco_transf_22

PF03901 Glyco_transf_22 25-381 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807477.1`	Pfam	`PF03901`	Glyco_transf_22	Family	25	381	8e-50	171.0	Alg9-like mannosyltransferase family
`XP_057807478.1`	Pfam	`PF03901`	Glyco_transf_22	Family	25	381	8e-50	171.0	Alg9-like mannosyltransferase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951495.1
TCCAAATGCTAGCTTATTGAAAATAGCAGTAGTCGTGTAACAAAGGCTCCTGATTTCTGTTTTTTCTAACTACCGTCTATCTGCCGTCCGCCCCTCGCCGCCGTCCTCGCCTCCTCCGGTCGCCTGTGGCCACGGCCTCGCCGCGTCGGACCTCTCCGTCCAAGCACCGCAACCTGCAAGCGCCAAGCAGGCAGCACAGCAGCAGCAGTTTCCAACGACAGGTCTCTGGGTTTTGCGCTCTACAGAAAGACAAAATGGCG...

XM_057951494.1
CCAAATGCTAGCTTATTGAAAATAGCAGTAGTCGTGTAACAAAGGCTCCTGATTTCTGTTTTTTCTAACTACCGTCTATCTGCCGTCCGCCCCTCGCCGCCGTCCTCGCCTCCTCCGGTCGCCTGTGGCCACGGCCTCGCCGCGTCGGACCTCTCCGTCCAAGCACCGCAACCTGCAAGCGCCAAGCAGGCAGCACAGCAGCAGCAGTTTCCAACGACAGGTCTCTGGGTTTTGCGCTCTACAGAAAGACAAAATGGCGC...

CDS

2 records

下载 CDS FASTA

LOC131022098
ATGGCGCTAAGTTCCAAATCAATGCAAGTTTATGGTTACGATCTGTTGCTGGGGTTGATTGCTGCATTTTACGTGCTCATGGTGCCTTACACTAAGGTTGAAGAAAGTTTCAATGTTCAGGCAATGCACGACATTTTGTACCACCAGCATCATACAGAAAAGTATGATCATTTGGAATTTCCTGGAGTAGTCCCTCGTACATTTATTGGCTCCATTCTTGTATCAACTCTAGCTTCTCCATTTGTGCTAGCCGCTAGTTT...

Protein

2 records

下载 Protein FASTA

XP_057807477.1
MALSSKSMQVYGYDLLLGLIAAFYVLMVPYTKVEESFNVQAMHDILYHQHHTEKYDHLEFPGVVPRTFIGSILVSTLASPFVLAASLLHFPKLYSLYAVRLVLGFIILTSLRFFRIQIRKNFGSQVEAFFVILTAIQFHMLFYCTRPLPNILAFGLVNLAYGYWFQRRFYAALNSLVFATIVFRCDILLLVSPLGLELLLSRSISLRKAVISCLIAACSFIGLTVMVDSVMWRRMLWPELEVFWFNSVLNRSSEWGTHAF...

XP_057807478.1
MALSSKSMQVYGYDLLLGLIAAFYVLMVPYTKVEESFNVQAMHDILYHQHHTEKYDHLEFPGVVPRTFIGSILVSTLASPFVLAASLLHFPKLYSLYAVRLVLGFIILTSLRFFRIQIRKNFGSQVEAFFVILTAIQFHMLFYCTRPLPNILAFGLVNLAYGYWFQRRFYAALNSLVFATIVFRCDILLLVSPLGLELLLSRSISLRKAVISCLIAACSFIGLTVMVDSVMWRRMLWPELEVFWFNSVLNRSSEWGTHAF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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