Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000171`

染色体: Chr04 坐标: 1533406-1536174 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000171`
名称	SmilChr04G000171
描述	pentatricopeptide repeat-containing protein At1g02150
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	1533406 - 1536174 / `+`

ID 对照

NCBI Gene ID	`LOC131022099`
GeneID	`131022099`
locus_tag	`-`
NCBI Name	`LOC131022099`
原始查询	`LOC131022099`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g02150
产物	pentatricopeptide repeat-containing protein At1g02150
Arabidopsis	`AT1G02150` (AT1G02150) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839577] identity=55; qcov=0.922; evalue=0; confidence=high
Rice	`Os04g0544400` (OSJNBb0038F03.9) - identity=46.9; qcov=0.812; evalue=1.83e-153; confidence=high
GO	GO:0005515 (protein binding); GO:0005739 (mitochondrion)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3)
InterPro	-
eggNOG	-
NR	GeneID:131022099

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057807479.1`
2	Chloroplast	叶绿体	0.60000	`XP_057807479.1`
3	Nucleus	细胞核	0.00000	`XP_057807479.1`
4	Chromosome	染色体	0.00000	`XP_057807479.1`
5	Centromere	着丝粒	0.00000	`XP_057807479.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:1533681`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B109,B62
`Chr4:1533684`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B1,B14,B76,D5
`Chr4:1533785`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B24,B55
`Chr4:1533936`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B140,B59,B73,C3,D11
`Chr4:1535031`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr4:1535132`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr4:1535745`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr4:1535865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B71,B78,C61
`Chr4:1535973`	`TGA`	`T`	2bp_deletion	frameshift_variant	119	A1,A10,A11,A18,A19,A20,A24,A3,A4,A5,A6,A8,A9,B100,B101,B102,B105,B106,B107,B108,B11,B113,B114,B115,B117,B119,B12,B120,B121,B125,B128,B130,B131,B135,B138,B16,B17,B23,B27,B28,B3,B31,B33,B35,B38,B39,B4,B40,B41,B46,B47,B49,B51,B59,B6,B60,B63,B64,B66,B68,B74,B78,B82,B85,B88,B89,B9,B90,B92,B93,B99,C11,C13,C17,C19,C20,C23,C27,C29,C3,C32,C34,C35,C38,C39,C4,C41,C43,C44,C47,C49,C5,C51,C52,C53,C54,C56,C57,C58,C65,C67,C68,C69,C7,C70,C73,C76,C78,C79,C81,C82,C83,C87,D10,D4,D6,D7,D8,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807479.1

554 aa

277

554

PPR

PPR_2

PPR_3

PPR

PF01535 PPR 191-219 aa PF01535 PPR 227-254 aa PF13041 PPR_2 227-269 aa PF13812 PPR_3 246-305 aa PF01535 PPR 260-286 aa PF01535 PPR 297-323 aa PF01535 PPR 368-393 aa PF01535 PPR 404-430 aa

XP_057807480.1

554 aa

277

554

PPR

PPR_2

PPR_3

PPR

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807479.1`	Pfam	`PF01535`	PPR	Repeat	191	219	2.1e-29	100.4	PPR repeat
`XP_057807479.1`	Pfam	`PF01535`	PPR	Repeat	227	254	2.1e-29	100.4	PPR repeat
`XP_057807479.1`	Pfam	`PF13041`	PPR_2	Repeat	227	269	1.7e-27	95.9	PPR repeat family
`XP_057807479.1`	Pfam	`PF13812`	PPR_3	Repeat	246	305	3.7e-12	46.9	Pentatricopeptide repeat domain
`XP_057807479.1`	Pfam	`PF01535`	PPR	Repeat	260	286	2.1e-29	100.4	PPR repeat
`XP_057807479.1`	Pfam	`PF01535`	PPR	Repeat	297	323	2.1e-29	100.4	PPR repeat
`XP_057807479.1`	Pfam	`PF01535`	PPR	Repeat	368	393	2.1e-29	100.4	PPR repeat
`XP_057807479.1`	Pfam	`PF01535`	PPR	Repeat	404	430	2.1e-29	100.4	PPR repeat
`XP_057807480.1`	Pfam	`PF01535`	PPR	Repeat	191	219	2.1e-29	100.4	PPR repeat
`XP_057807480.1`	Pfam	`PF01535`	PPR	Repeat	227	254	2.1e-29	100.4	PPR repeat
`XP_057807480.1`	Pfam	`PF13041`	PPR_2	Repeat	227	269	1.7e-27	95.9	PPR repeat family
`XP_057807480.1`	Pfam	`PF13812`	PPR_3	Repeat	246	305	3.7e-12	46.9	Pentatricopeptide repeat domain
`XP_057807480.1`	Pfam	`PF01535`	PPR	Repeat	260	286	2.1e-29	100.4	PPR repeat
`XP_057807480.1`	Pfam	`PF01535`	PPR	Repeat	297	323	2.1e-29	100.4	PPR repeat
`XP_057807480.1`	Pfam	`PF01535`	PPR	Repeat	368	393	2.1e-29	100.4	PPR repeat
`XP_057807480.1`	Pfam	`PF01535`	PPR	Repeat	404	430	2.1e-29	100.4	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951497.1
AATAAAGGAAAGTAGCGACATCTTATCTCTAGAAAAAAACCCAAAAGAGGGAAAAGCAACGAACTGTAAAACCCCAAATTCAAGCGGCAGAGGCGCGCCACTTCCACTCTCACAGTCTCAGCATAAACCCTAAATTCCCAAATCCAACTTTCCACAGCAGAAGCATGATTCTCCAACCCACTGCTCAAATTCTTCCCCCTAATTATCACCAGAAGAATTCTAACCATTTGCAGATTTCAACTTCGCTCTCATTGTCGTCT...

XM_057951496.1
AAATTCCCAAATCCAAGCGGCAGAGGCGCGCCACTTCCACTCTCACAGTCTCAGCATAAACCCTAAATTCCCAAATCCAACTTTCCACAGCAGAAGCATGATTCTCCAACCCACTGCTCAAATTCTTCCCCCTAATTATCACCAGAAGAATTCTAACCATTTGCAGATTTCAACTTCGCTCTCATTGTCGTCTGGGCTTCTGCAAAATTCCACTTATTTTCTCAAGCAATCCAGTTTACCGGCGGCCTCTAAAACCCACA...

CDS

2 records

下载 CDS FASTA

LOC131022099
ATGATTCTCCAACCCACTGCTCAAATTCTTCCCCCTAATTATCACCAGAAGAATTCTAACCATTTGCAGATTTCAACTTCGCTCTCATTGTCGTCTGGGCTTCTGCAAAATTCCACTTATTTTCTCAAGCAATCCAGTTTACCGGCGGCCTCTAAAACCCACAACAATCCGGCATTTGTCACTTGCTCGTCGATACCGCAGCCTTACAGCTATGGAACTGTTGATTATGAGAAGAGGCCGATGCTGAAATGGAACGCTAT...

Protein

2 records

下载 Protein FASTA

XP_057807479.1
MILQPTAQILPPNYHQKNSNHLQISTSLSLSSGLLQNSTYFLKQSSLPAASKTHNNPAFVTCSSIPQPYSYGTVDYEKRPMLKWNAIHKKISSLENSNLDGGAASVLNQAENEGKRLSKWELSRVVKELRKFRRFKLALEVYDWMNNRAERFRITTSDTAIQLDLIAKVHGISSAEQYFQKLPDGLKDKRIYGSLLNAYVRARMREEAESLMNKIKNRGYASHPLPYNVMMTLYMSLKEYEKIEPLISEMKEKSIALDLY...

XP_057807480.1
MILQPTAQILPPNYHQKNSNHLQISTSLSLSSGLLQNSTYFLKQSSLPAASKTHNNPAFVTCSSIPQPYSYGTVDYEKRPMLKWNAIHKKISSLENSNLDGGAASVLNQAENEGKRLSKWELSRVVKELRKFRRFKLALEVYDWMNNRAERFRITTSDTAIQLDLIAKVHGISSAEQYFQKLPDGLKDKRIYGSLLNAYVRARMREEAESLMNKIKNRGYASHPLPYNVMMTLYMSLKEYEKIEPLISEMKEKSIALDLY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器