Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000189`

染色体: Chr04 坐标: 1677559-1686255 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000189`
名称	SmilChr04G000189
描述	SNF2 domain-containing protein CLASSY 4-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	1677559 - 1686255 / `-`

ID 对照

NCBI Gene ID	`LOC131022117`
GeneID	`131022117`
locus_tag	`-`
NCBI Name	`LOC131022117`
原始查询	`LOC131022117`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SNF2 domain-containing protein CLASSY 4-like
产物	SNF2 domain-containing protein CLASSY 4-like
Arabidopsis	`AT1G05490` (chr31) chromatin remodeling 31 [Source:NCBI gene (formerly Entrezgene);Acc:837051] identity=48.9; qcov=0.488; evalue=0; confidence=medium
Rice	`Os02g0650800` (CTD2) - identity=41.8; qcov=0.501; evalue=3.03e-180; confidence=medium
GO	GO:0005524 (ATP binding); GO:0080188 (gene silencing by siRNA-directed DNA methylation); GO:0140658 (ATP-dependent chromatin remodeler activity)
KEGG	smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage))
Pfam	PF00176 (SNF2-rel_dom); PF00271 (Helicase_C)
InterPro	-
eggNOG	-
NR	GeneID:131022117

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807504.1`
2	Chromosome	染色体	0.60000	`XP_057807504.1`
3	Nucleoplasm	核质	0.40000	`XP_057807504.1`
4	Centromere	着丝粒	0.00000	`XP_057807504.1`
5	Chromatin	染色质	0.00000	`XP_057807504.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:1679669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C53,D1
`Chr4:1679707`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr4:1680098`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B11,B48,C52
`Chr4:1680105`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr4:1680301`	`G`	`A`	EMS_canonical_SNV	stop_gained	56	A1,A10,A13,A20,A25,A6,B11,B111,B118,B120,B126,B139,B24,B28,B29,B30,B31,B35,B42,B43,B48,B5,B59,B61,B63,B64,B65,B68,B76,B83,B84,B98,C16,C3,C31,C32,C34,C35,C37,C38,C39,C40,C41,C43,C45,C47,C52,C58,C63,C68,C8,C80,C81,C84,D2,D3
`Chr4:1680410`	`C`	`CA`	1bp_insertion	frameshift_variant	6	A22,B118,B40,B65,C12,C77
`Chr4:1680424`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A25,C40,C45
`Chr4:1680475`	`TC`	`T`	1bp_deletion	frameshift_variant	20	B111,B118,B120,B126,B29,B30,B59,B83,B84,C16,C32,C38,C39,C41,C45,C52,C68,C80,C84,D2
`Chr4:1680477`	`TTA`	`T`	2bp_deletion	frameshift_variant	19	B111,B118,B120,B126,B29,B30,B59,B83,B84,C16,C32,C38,C39,C41,C52,C68,C80,C84,D2
`Chr4:1680548`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A25,C40,C45
`Chr4:1680556`	`TCC`	`T`	2bp_deletion	frameshift_variant	20	B111,B118,B120,B126,B29,B30,B59,B83,B84,C16,C32,C38,C39,C41,C45,C52,C68,C80,C84,D2
`Chr4:1680620`	`TGG`	`T`	2bp_deletion	frameshift_variant	22	A25,B111,B118,B120,B126,B29,B30,B59,B83,B84,C16,C32,C38,C39,C40,C41,C45,C52,C68,C80,C84,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807504.1

1508 aa

754

1508

SNF2-rel_dom

Helicase_C

PF00176 SNF2-rel_dom 936-1254 aa PF00271 Helicase_C 1301-1419 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807504.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	936	1254	8.9e-24	84.8	SNF2-related domain
`XP_057807504.1`	Pfam	`PF00271`	Helicase_C	Domain	1301	1419	9.5e-18	65.2	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009101158.1
AAACTCCATATATTGCAAACCAATGTTCATCTGTATTAAATATATAATCTAGGCTGGATTACAATTATTTATTGCATACTGGAATTTCACAAATATTTTGTTTTCCATTTATTTTTCAAAAATAAAGCTACTGTGTTTATTATGTAAATAATTGTTGCTGACAATCTCCAGCGTTTGTCTTAACAGATTTAGCACCTAAGAAATTCACCGTCGATTCAAGAAAAAGAGTCTTCGTGCTACTCATCAACTTCAAAAAATGA...

XM_057951521.1
AAACTCCATATATTGCAAACCAATGTTCATCTGTATTAAATATATAATCTAGGCTGGATTACAATTATTTATTGCATACTGGAATTTCACAAATATTTTGTTTTCCATTTATTTTTCAAAAATAAAGCTACTGTGTTTATTATGTAAATAATTGTTGCTGACAATCTCCAGCGTTTGTCTTAACAGATTTAGCACCTAAGAAATTCACCGTCGATTCAAGAAAAAGAGTCTTCGTGCTACTCATCAACTTCAAAAAATGA...

CDS

1 records

下载 CDS FASTA

LOC131022117
ATGAGTGATAGGCATTCAATGAATCAGGAAGAAGCTACAAAGGCATTCTTGTCTGGTGTTTCCGAGAGAACCAGATCAAAGAGAGATGCCTACTTAGGGGTTAGAGCACAAGCACAGGGGATTCCTTCAAGCTCTTACTATGATAGTATAAGAGAGCGGAAGAGGAAGAGAGAAATGAAGCCAGCTACAAGTGTTGGAGGCCGAAGAAAAAGATCTGGTTCTTTCATAAAGATGGGGATGGACAATGAAGACTTGGATTC...

Protein

1 records

下载 Protein FASTA

XP_057807504.1
MSDRHSMNQEEATKAFLSGVSERTRSKRDAYLGVRAQAQGIPSSSYYDSIRERKRKREMKPATSVGGRRKRSGSFIKMGMDNEDLDSEGGAIKIIDKAEYISQIPFFAPKMKSSSKEKLNRSSSSATPKKGAIKKKTPVVGHDSEHAYPHESCSFIQIESDSDETTPEDIEIQRVDKAELKSGKIYFKSKRGQSEMQGLSTARLSKKVGGACESAHHSIISLSDYSTGSDTLAEDSTSLAAEVNEDRSFRDISSKGVLKK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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