当前解析结果
SmilChr04G000197| 统一新 Gene ID | SmilChr04G000197 |
|---|---|
| 名称 | SmilChr04G000197 |
| 描述 | uncharacterized SmilChr04G000197 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 1770448 - 1773316 / + |
| NCBI Gene ID | LOC131022126 |
|---|---|
| GeneID | 131022126 |
| locus_tag | - |
| NCBI Name | LOC131022126 |
| 原始查询 | LOC131022126 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Aminotransferase-like, plant mobile domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:831969]; symbol=AT5G18510; hit=AT5G18510; species=arabidopsis; confidence=weak |
| 产物 | Aminotransferase-like, plant mobile domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:831969]; symbol=AT5G18510; hit=AT5G18510; species=arabidopsis; confidence=weak |
| Arabidopsis | AT5G18510 (AT5G18510)Aminotransferase-like, plant mobile domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:831969] identity=20.8; qcov=0.532; evalue=2.59e-10; confidence=weak |
| Rice | Os03g0565300- identity=25.4; qcov=0.254; evalue=1.52e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF10536 (PMD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022126 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057807520.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057807520.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057807520.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057807520.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057807520.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:1770483 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr4:1770500 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B90 |
Chr4:1770533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr4:1770801 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr4:1771000 |
G |
A |
EMS_canonical_SNV | stop_gained | 83 | A14,A15,A18,A19,A2,A21,A23,A8,B102,B105,B106,B11,B112,B118,B123,B128,B135,B136,B139,B16,B17,B18,B23,B29,B3,B30,B31,B40,B43,B45,B49,B53,B56,B59,B6,B61,B66,B68,B69,B70,B73,B76,B80,B81,B87,B88,B90,B91,B95,B96,C11,C12,C13,C14,C15,C18,C21,C30,C34,C35,C36,C37,C39,C4,C40,C41,C43,C45,C47,C51,C55,C63,C7,C74,C76,C78,C81,C86,C87,D2,D4,D7,D9 |
Chr4:1771002 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr4:1771073 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,A19 |
Chr4:1771106 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr4:1771388 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr4:1771398 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr4:1771665 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr4:1771686 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057807520.1PF10536
PMD 310-553 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807520.1 |
Pfam | PF10536 |
PMD | Domain | 310 | 553 | 4.5e-28 | 99.2 | Plant mobile domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。