Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G000204

染色体: Chr04 坐标: 1818353-1820015 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G000204
名称SmilChr04G000204
描述acyl carrier protein 1, mitochondrial-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向1818353 - 1820015 / -

ID 对照

NCBI Gene IDLOC131022132
GeneID131022132
locus_tag-
NCBI NameLOC131022132
原始查询LOC131022132

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述acyl carrier protein 1, mitochondrial-like
产物acyl carrier protein 1%2C mitochondrial-like
ArabidopsisAT2G44620 (MTACP-1)
mitochondrial acyl carrier protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:819070]
identity=70.5; qcov=1.02; evalue=1.13e-56; confidence=high
RiceOs07g0222800 (P0592C06.130)
-
identity=60.8; qcov=1.09; evalue=4.25e-47; confidence=medium
GOGO:0000035 (acyl binding); GO:0000036 (acyl carrier activity); GO:0005739 (mitochondrion); GO:0006633 (fatty acid biosynthetic process)
KEGGsmil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
PfamPF00550 (PP-binding)
InterPro-
eggNOG-
NRGeneID:131022132

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057807526.1
2 Mitochondrion inner membrane 线粒体内膜 0.60000 XP_057807526.1
3 Mitochondrion matrix 线粒体基质 0.40000 XP_057807526.1
4 Mitochondrion membrane 线粒体膜 0.40000 XP_057807526.1
5 Nucleus 细胞核 0.00000 XP_057807526.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:1818733 G A EMS_canonical_SNV CDS_variant 5 B31,B61,C53,C82,D1
Chr4:1818748 C T EMS_canonical_SNV CDS_variant 5 A16,B129,B64,B68,C70
Chr4:1818820 C T EMS_canonical_SNV CDS_variant 1 C25
Chr4:1818846 G A EMS_canonical_SNV CDS_variant 1 B44
Chr4:1818872 G A EMS_canonical_SNV CDS_variant 5 B10,B112,B83,C48,C59
Chr4:1819672 C T EMS_canonical_SNV CDS_variant 3 B72,C45,C75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057807526.1
119 aa
N
1
60
119
PP-binding
C
PF00550 PP-binding 45-99 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057807526.1 Pfam PF00550 PP-binding Domain 45 99 7.6e-12 46.0 Phosphopantetheine attachment site

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057951543.1
ACAATAATAAAACTTGATATTACGAAAAAATAAGAAGATATAGGAGATTTGAAACTAATAATTTTGGACGGACGCAGTAATTTGAAACTTACGAATTACACATTCTTTTTTTTTTTTTTGAGAGAGTACGAATTACACATTCGATATAGGAGATTTATGCTTTTTTTTTTTTTTTTTTTGCGCGTAAAACAAATCATAGAGAAGGAGAAAAAGAGAGAAATCATTTCACCTCCTCCATTGGATCCTAGAAAGGAGTGTTA...

CDS

1 records

下载 CDS FASTA
LOC131022132
ATGGCATCGGCGTTGCGATCCAGCATCATCCGCCACATTAGAGTCCCGATAACCCTACACGGGCCCCGTTTGACGGCCGTCCGATCATTGTCGTCGTCTCACGATGATCACCTCGACAAGAAGGAAGTGATAGACCGAGTTCTCGACGTCGTCAAAAGTTTCCCCAAAGTCGATCCCTCCAAGGTGACTCCCGATGCTCATTTTCAGAAGGATCTGGGATTGGACAGCTTGGATACTGTGGAGATTGTAATGGCTCTTGA...

Protein

1 records

下载 Protein FASTA
XP_057807526.1
MASALRSSIIRHIRVPITLHGPRLTAVRSLSSSHDDHLDKKEVIDRVLDVVKSFPKVDPSKVTPDAHFQKDLGLDSLDTVEIVMALEEEFKLEIPDKEADKIDSFPLAVEYIFNHPMTS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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