当前解析结果
SmilChr01G000174| 统一新 Gene ID | SmilChr01G000174 |
|---|---|
| 名称 | SmilChr01G000174 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 2841535 - 2845346 / - |
| NCBI Gene ID | LOC131022137 |
|---|---|
| GeneID | 131022137 |
| locus_tag | - |
| NCBI Name | LOC131022137 |
| 原始查询 | LOC131022137 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=29.8; qcov=0.73; evalue=2.19e-78; confidence=low |
| Rice | Os11g0681300- identity=28.6; qcov=0.717; evalue=6.53e-64; confidence=low |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022137 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057807857.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057807857.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057807857.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057807857.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057807857.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:2841616 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B128,B13,C61 |
Chr1:2841619 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C28,C74 |
Chr1:2841625 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A19,B140,B68,C21 |
Chr1:2841666 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B94,C32 |
Chr1:2841698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr1:2841753 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B102,B58,C59 |
Chr1:2841766 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A11,B137,B2,B21,C36 |
Chr1:2841789 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B71,B94 |
Chr1:2841794 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B119,B64,C18 |
Chr1:2841798 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B64,C18 |
Chr1:2841848 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B102,B58 |
Chr1:2842067 |
CAT |
C |
2bp_deletion | frameshift_variant | 1 | C25 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807857.1PF21056
ZSWIM1-3_RNaseH-like 279-385 aa
PF10551
MULE 304-395 aa
PF04434
SWIM 596-618 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807857.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 279 | 385 | 2.5e-09 | 37.8 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057807857.1 |
Pfam | PF10551 |
MULE | Domain | 304 | 395 | 1.6e-27 | 96.4 | MULE transposase domain |
XP_057807857.1 |
Pfam | PF04434 |
SWIM | Domain | 596 | 618 | 0.00023 | 21.3 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。