Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000216`

染色体: Chr04 坐标: 1899324-1903515 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000216`
名称	SmilChr04G000216
描述	UMP-CMP kinase 3-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	1899324 - 1903515 / `+`

ID 对照

NCBI Gene ID	`LOC131022143`
GeneID	`131022143`
locus_tag	`-`
NCBI Name	`LOC131022143`
原始查询	`LOC131022143`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UMP-CMP kinase 3-like
产物	UMP-CMP kinase 3-like
Arabidopsis	`AT5G26667` (PYR6) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832710] identity=84.2; qcov=0.976; evalue=8.4e-120; confidence=high
Rice	`Os02g0778400` - identity=81.2; qcov=1; evalue=2.97e-119; confidence=high
GO	GO:0004127 (GO:0004127); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006207 ('de novo' pyrimidine nucleobase biosynthetic process); GO:0006225 (UDP biosynthetic process); GO:0033862 (UMP kinase activity); GO:0046705 (CDP biosynthetic process)
KEGG	smil00240 (Pyrimidine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00406 (ADK); PF13207 (AAA_17); PF13238 (AAA_18); PF13671 (AAA_33)
InterPro	-
eggNOG	-
NR	GeneID:131022143

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057807538.1`
2	Cytoplasm	细胞质	0.80000	`XP_057807538.1`
3	Nucleus	细胞核	0.00000	`XP_057807538.1`
4	Chromosome	染色体	0.00000	`XP_057807538.1`
5	Centromere	着丝粒	0.00000	`XP_057807538.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:1900669`	`TG`	`T`	1bp_deletion	frameshift_variant	93	A13,A14,A20,A24,A25,A8,A9,B10,B100,B103,B107,B110,B119,B120,B121,B127,B128,B130,B137,B139,B17,B18,B22,B23,B24,B26,B27,B33,B34,B35,B37,B4,B42,B43,B44,B45,B46,B48,B50,B53,B57,B60,B62,B67,B7,B72,B74,B77,B78,B8,B80,B83,B86,B87,B88,B89,B99,C10,C14,C15,C16,C17,C19,C2,C21,C22,C25,C27,C32,C36,C42,C44,C45,C47,C51,C52,C54,C59,C67,C68,C70,C74,C78,C81,C83,C85,C9,D1,D4,D6,D7,D8,D9
`Chr4:1900939`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B131,B71,C33,C62,C73
`Chr4:1901205`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B13,B33,B35
`Chr4:1901733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A5,B100,B29,B81,B89
`Chr4:1901770`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr4:1902224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr4:1902447`	`C`	`CT`	1bp_insertion	frameshift_variant	24	A1,A3,A6,B105,B11,B132,B139,B21,B22,B5,B61,B72,B90,B92,B97,C18,C23,C29,C44,C47,C52,C61,D11,D7
`Chr4:1902449`	`T`	`TC`	1bp_insertion	frameshift_variant	16	A24,B1,B108,B112,B14,B56,B65,B75,B9,B96,C3,C4,C5,C54,C58,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807538.1

216 aa

108

216

AAA_33

AAA_18

ADK

AAA_17

PF13671 AAA_33 24-157 aa PF13238 AAA_18 25-152 aa PF00406 ADK 27-179 aa PF13207 AAA_17 28-158 aa

XP_057807540.1

216 aa

108

216

AAA_33

AAA_18

ADK

AAA_17

PF13671 AAA_33 24-157 aa PF13238 AAA_18 25-152 aa PF00406 ADK 27-179 aa PF13207 AAA_17 28-158 aa

XP_057807541.1

208 aa

104

208

AAA_33

AAA_18

ADK

AAA_17

PF13671 AAA_33 24-157 aa PF13238 AAA_18 25-152 aa PF00406 ADK 27-179 aa PF13207 AAA_17 28-158 aa

XP_057807542.1

208 aa

104

208

AAA_33

AAA_18

ADK

AAA_17

PF13671 AAA_33 24-157 aa PF13238 AAA_18 25-152 aa PF00406 ADK 27-179 aa PF13207 AAA_17 28-158 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807538.1`	Pfam	`PF13671`	AAA_33	Domain	24	157	2.3e-06	28.7	AAA domain
`XP_057807538.1`	Pfam	`PF13238`	AAA_18	Domain	25	152	7.9e-09	36.8	AAA domain
`XP_057807538.1`	Pfam	`PF00406`	ADK	Domain	27	179	6.3e-50	169.9	Adenylate kinase
`XP_057807538.1`	Pfam	`PF13207`	AAA_17	Domain	28	158	2.2e-37	129.1	AAA domain
`XP_057807540.1`	Pfam	`PF13671`	AAA_33	Domain	24	157	2.3e-06	28.7	AAA domain
`XP_057807540.1`	Pfam	`PF13238`	AAA_18	Domain	25	152	7.9e-09	36.8	AAA domain
`XP_057807540.1`	Pfam	`PF00406`	ADK	Domain	27	179	6.3e-50	169.9	Adenylate kinase
`XP_057807540.1`	Pfam	`PF13207`	AAA_17	Domain	28	158	2.2e-37	129.1	AAA domain
`XP_057807541.1`	Pfam	`PF13671`	AAA_33	Domain	24	157	2e-06	28.9	AAA domain
`XP_057807541.1`	Pfam	`PF13238`	AAA_18	Domain	25	152	7.1e-09	36.9	AAA domain
`XP_057807541.1`	Pfam	`PF00406`	ADK	Domain	27	179	5.6e-50	170.1	Adenylate kinase
`XP_057807541.1`	Pfam	`PF13207`	AAA_17	Domain	28	158	2e-37	129.2	AAA domain
`XP_057807542.1`	Pfam	`PF13671`	AAA_33	Domain	24	157	2e-06	28.9	AAA domain
`XP_057807542.1`	Pfam	`PF13238`	AAA_18	Domain	25	152	7.1e-09	36.9	AAA domain
`XP_057807542.1`	Pfam	`PF00406`	ADK	Domain	27	179	5.6e-50	170.1	Adenylate kinase
`XP_057807542.1`	Pfam	`PF13207`	AAA_17	Domain	28	158	2e-37	129.2	AAA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057951559.1
ACTCAACAATCAGGAAAGGAAACTACAAAACGTTAAAACGCAACAATAAAGTATTATTAGAATGGATTTGTAATACTAATATGATTAGAATAACAATAAATTAATATTATTTGCATTACTATTATTTAATTGTGCTGCTAAAGGTTTCAGTTGGTTGCCATTAGCAGCTCTTATAACTCCCTCACACTCTCTATATATTACTGCATACACACGCTCTTCAAATCGCTAGATCTCCCTCTCTTTCTTCCAATTCTTCACAA...

XM_057951555.1
CATTACTATTATTTAATTGTGCTGCTAAAGGTTTCAGTTGGTTGCCATTAGCAGCTCTTATAACTCCCTCACACTCTCTATATATTACTGCATACACACGCTCTTCAAATCGCTAGATCTCCCTCTCTTTCTTCCAATTCTTCACAACAATTTGTATAAGATTCTTGCATTCTTTGGGTTCTGCTGCGTACCAGAATTTCTGCGGCTGCTATGGGGACTGTTGTAGATGCTGCAAACAAGGAAGCAAAGGGAAGTGCACC...

CDS

4 records

下载 CDS FASTA

LOC131022143
ATGGGGACTGTTGTAGATGCTGCAAACAAGGAAGCAAAGGGAAGTGCACCAACCAACAAGAAGGTCACCGTTGTGTTTGTTCTGGGTGGCCCAGGCAGTGGTAAGGGCACGCAGTGCGCAAACATCGTCGAACATTTTGGTTATACTCACCTGAGTGCAGGTGATCTTCTCCGAGCGGAGATAAAATCTGGTTCTGAAAATGGGACTATGATTCAAAACATGATTAAGGAGGGAAAGATTGTACCTTCAGAGGTCACAAT...

Protein

4 records

下载 Protein FASTA

XP_057807538.1
MGTVVDAANKEAKGSAPTNKKVTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQRAIEENGNDKFLIDGFPRNEENRAAFESVTGIQPEFVLFFNCSEEEMEKRLLGRNQGREDDNIETIRKRFKVYMESSLPVIEYYSAKGKVKKIDAAKPIGEVFEAVKAIFTPPKVCTIMLPGIDA

XP_057807540.1
MGTVVDAANKEAKGSAPTNKKVTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQRAIEENGNDKFLIDGFPRNEENRAAFESVTGIQPEFVLFFNCSEEEMEKRLLGRNQGREDDNIETIRKRFKVYMESSLPVIEYYSAKGKVKKIDAAKPIGEVFEAVKAIFTPPKVCTIMLPGIDA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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