Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000249`

染色体: Chr04 坐标: 2242715-2265437 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000249`
名称	SmilChr04G000249
描述	myosin-12
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	2242715 - 2265437 / `-`

ID 对照

NCBI Gene ID	`LOC131022172`
GeneID	`131022172`
locus_tag	`-`
NCBI Name	`LOC131022172`
原始查询	`LOC131022172`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	myosin-12
产物	myosin-12
Arabidopsis	`AT2G31900` (XIF) myosin-like protein XIF [Source:NCBI gene (formerly Entrezgene);Acc:817748] identity=72.4; qcov=0.947; evalue=0; confidence=high
Rice	`Os03g0747900` (OsMyoXIE) - identity=74.7; qcov=0.905; evalue=0; confidence=high
GO	GO:0000146 (microfilament motor activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0007015 (actin filament organization); GO:0015629 (actin cytoskeleton); GO:0016459 (myosin complex); GO:0030050 (vesicle transport along actin filament); GO:0031982 (vesicle); GO:0051015 (actin filament binding)
KEGG	smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage))
Pfam	PF00063 (Myosin_head); PF00612 (IQ); PF01843 (DIL)
InterPro	-
eggNOG	-
NR	GeneID:131022172

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057807583.1`
2	Cell membrane	细胞膜	0.80000	`XP_057807583.1`
3	Cytoplasm	细胞质	0.20000	`XP_057807583.1`
4	Phragmoplast	Phragmoplast	0.20000	`XP_057807585.1`
5	Nucleus	细胞核	0.00000	`XP_057807585.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:2242748`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr4:2242797`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:2242882`	`G`	`A`	EMS_canonical_SNV	stop_gained	28	A1,B103,B115,B119,B129,B130,B134,B16,B20,B23,B26,B31,B36,B54,B66,B73,B81,C15,C17,C2,C30,C46,C60,C74,C77,C80,D1,D5
`Chr4:2242883`	`TC`	`T`	1bp_deletion	frameshift_variant	89	A10,A11,A14,A18,A2,A21,A23,A24,A25,A4,A7,A8,A9,B1,B103,B110,B113,B118,B119,B120,B126,B127,B128,B136,B139,B140,B15,B17,B24,B31,B37,B38,B39,B41,B53,B56,B62,B66,B67,B69,B70,B71,B76,B78,B85,B87,B88,B9,B91,B96,B99,C1,C19,C20,C21,C24,C26,C27,C28,C30,C31,C33,C38,C40,C45,C46,C48,C49,C50,C51,C57,C6,C61,C62,C64,C65,C66,C73,C74,C75,C78,C79,C83,D2,D3,D4,D5,D7,D9
`Chr4:2242896`	`C`	`T`	EMS_canonical_SNV	stop_gained	9	A11,B16,B22,B89,C12,C16,C26,C62,D3
`Chr4:2242897`	`AGC`	`A`	2bp_deletion	frameshift_variant	2	B52,C1
`Chr4:2242897`	`AGC`	`A`	2bp_deletion	CDS_variant	2	B52,C1
`Chr4:2242900`	`A`	`ATG`	2bp_insertion	frameshift_variant	2	B52,C1
`Chr4:2242900`	`A`	`ATG`	2bp_insertion	CDS_variant	2	B52,C1
`Chr4:2242914`	`TG`	`T`	1bp_deletion	frameshift_variant	68	A10,A15,A22,B104,B105,B106,B111,B114,B126,B131,B133,B137,B21,B22,B24,B25,B27,B3,B30,B32,B35,B36,B4,B41,B54,B55,B57,B59,B6,B75,B76,B86,B90,B92,B94,B95,C10,C11,C17,C21,C25,C27,C28,C34,C35,C38,C39,C42,C43,C48,C5,C56,C57,C63,C64,C66,C67,C69,C7,C70,C71,C77,C8,C81,C85,C9,D10,D2
`Chr4:2242989`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B8,C33,C4,C40,C61
`Chr4:2243014`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B88

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807583.1

1572 aa

786

1572

Myosin_head

DIL

PF00063 Myosin_head 64-719 aa PF00612 IQ 737-754 aa PF01843 DIL 1389-1493 aa

XP_057807584.1

1570 aa

785

1570

Myosin_head

DIL

PF00063 Myosin_head 64-719 aa PF00612 IQ 737-754 aa PF01843 DIL 1387-1491 aa

XP_057807585.1

1521 aa

760

1521

Myosin_head

DIL

PF00063 Myosin_head 64-719 aa PF00612 IQ 737-754 aa PF01843 DIL 1389-1440 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807583.1`	Pfam	`PF00063`	Myosin_head	Domain	64	719	2.1e-251	836.7	Myosin head (motor domain)
`XP_057807583.1`	Pfam	`PF00612`	IQ	Motif	737	754	1.8e-09	37.3	IQ calmodulin-binding motif
`XP_057807583.1`	Pfam	`PF01843`	DIL	Repeat	1389	1493	1.1e-30	106.6	DIL domain
`XP_057807584.1`	Pfam	`PF00063`	Myosin_head	Domain	64	719	2.1e-251	836.7	Myosin head (motor domain)
`XP_057807584.1`	Pfam	`PF00612`	IQ	Motif	737	754	1.7e-09	37.3	IQ calmodulin-binding motif
`XP_057807584.1`	Pfam	`PF01843`	DIL	Repeat	1387	1491	1.1e-30	106.6	DIL domain
`XP_057807585.1`	Pfam	`PF00063`	Myosin_head	Domain	64	719	1.9e-251	836.8	Myosin head (motor domain)
`XP_057807585.1`	Pfam	`PF00612`	IQ	Motif	737	754	1.4e-09	37.6	IQ calmodulin-binding motif
`XP_057807585.1`	Pfam	`PF01843`	DIL	Repeat	1389	1440	2.5e-13	50.8	DIL domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057951602.1
CCTTTTCCTACCTTGCTCTGCTCCTTTTCATTTCAACATTCCTTCAAATACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGCAGAAACTTACTCATTTTGTGTTCAATGCTCAGATAGCCTTCACCAGAAATGGGTAGTCCGGTAAACATCATTGTTGGATCGCATGTTTGGGCTGAAGATCCTGAAGCTGCGTGGATCGATGGACAAGTGTTAGAGATTAAAGGATTGGATGCAACTATACTTACTACAGATGC...

XM_057951601.1
CCTTTTCCTACCTTGCTCTGCTCCTTTTCATTTCAACATTCCTTCAAATACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGCAGAAACTTACTCATTTTGTGTTCAATGCTCAGATAGCCTTCACCAGAAATGGGTAGTCCGGTAAACATCATTGTTGGATCGCATGTTTGGGCTGAAGATCCTGAAGCTGCGTGGATCGATGGACAAGTGTTAGAGATTAAAGGATTGGATGCAACTATACTTACTACAGATGC...

CDS

3 records

下载 CDS FASTA

LOC131022172
ATGGGTAGTCCGGTAAACATCATTGTTGGATCGCATGTTTGGGCTGAAGATCCTGAAGCTGCGTGGATCGATGGACAAGTGTTAGAGATTAAAGGATTGGATGCAACTATACTTACTACAGATGCCAAGACTATAGTTGCAGCTATTTCAAGCATATATCCAAAAGATACTGAAGCGCCCCCGGCCGGGGTTGATGATATGACCAAGTTAGCTTACCTCCACGAGCCGGGGGTCTTATACAACCTCGCATGTCGCTTTTC...

Protein

3 records

下载 Protein FASTA

XP_057807583.1
MGSPVNIIVGSHVWAEDPEAAWIDGQVLEIKGLDATILTTDAKTIVAAISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLYNLACRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMQQYKGAAFGELSPHLFAVADTCYRSIINEHGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSGTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKHGKISGAAVRTYLLERSRVCQVSDPERNYHCFYML...

XP_057807584.1
MGSPVNIIVGSHVWAEDPEAAWIDGQVLEIKGLDATILTTDAKTIVAAISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLYNLACRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMQQYKGAAFGELSPHLFAVADTCYRSIINEHGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSGTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKHGKISGAAVRTYLLERSRVCQVSDPERNYHCFYML...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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