当前解析结果
SmilChr04G000283| 统一新 Gene ID | SmilChr04G000283 |
|---|---|
| 名称 | SmilChr04G000283 |
| 描述 | cardiolipin synthase (CMP-forming), mitochondrial-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 2590423 - 2591733 / - |
| NCBI Gene ID | LOC131022200 |
|---|---|
| GeneID | 131022200 |
| locus_tag | - |
| NCBI Name | LOC131022200 |
| 原始查询 | LOC131022200 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cardiolipin synthase (CMP-forming), mitochondrial-like |
| 产物 | cardiolipin synthase (CMP-forming)%2C mitochondrial-like |
| Arabidopsis | AT4G04870 (CLS)cardiolipin synthase [Source:NCBI gene (formerly Entrezgene);Acc:825825] identity=32.6; qcov=1.05; evalue=8.08e-14; confidence=low |
| Rice | Os01g0789100- identity=32.4; qcov=1.02; evalue=6.09e-10; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022200 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057807618.1 |
| 2 | Chloroplast | 叶绿体 | 0.60000 | XP_057807618.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057807618.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807618.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807618.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:2591202 |
G |
GT |
1bp_insertion | frameshift_variant | 5 | A20,B109,B117,B31,C61 |
Chr4:2591202 |
G |
GT |
1bp_insertion | CDS_variant | 5 | A20,B109,B117,B31,C61 |
Chr4:2591230 |
T |
TAA |
2bp_insertion | frameshift_variant | 5 | B122,B130,B40,C55,C74 |
Chr4:2591230 |
T |
TAA |
2bp_insertion | CDS_variant | 5 | B122,B130,B40,C55,C74 |
Chr4:2591273 |
GC |
G |
1bp_deletion | frameshift_variant | 5 | B122,B130,B40,C55,C74 |
Chr4:2591273 |
GC |
G |
1bp_deletion | CDS_variant | 5 | B122,B130,B40,C55,C74 |
Chr4:2591284 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B41,C10,C42 |
Chr4:2591320 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B10,C34,C79 |
Chr4:2591326 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr4:2591344 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:2591373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr4:2591453 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,C50 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。