Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000284`

染色体: Chr04 坐标: 2595443-2603275 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000284`
名称	SmilChr04G000284
描述	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	2595443 - 2603275 / `-`

ID 对照

NCBI Gene ID	`LOC131022201`
GeneID	`131022201`
locus_tag	`-`
NCBI Name	`LOC131022201`
原始查询	`LOC131022201`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic-like
产物	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1%2C chloroplastic-like
Arabidopsis	`AT4G04870` (CLS) cardiolipin synthase [Source:NCBI gene (formerly Entrezgene);Acc:825825] identity=48.2; qcov=0.984; evalue=1.45e-82; confidence=high
Rice	`Os01g0789100` - identity=48; qcov=0.961; evalue=8.61e-67; confidence=high
GO	GO:0005739 (mitochondrion); GO:0008808 (cardiolipin synthase activity); GO:0016020 (membrane); GO:0032049 (cardiolipin biosynthetic process)
KEGG	smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF01066 (CDP-OH_P_transf)
InterPro	-
eggNOG	-
NR	GeneID:131022201

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057807619.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057807619.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057807619.1`
4	Nucleus	细胞核	0.00000	`XP_057807619.1`
5	Chromosome	染色体	0.00000	`XP_057807619.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:2595652`	`G`	`A`	EMS_canonical_SNV	stop_gained	12	A16,B1,B126,B27,B6,B63,B7,B91,B97,C49,C63,D5
`Chr4:2595663`	`CT`	`C`	1bp_deletion	frameshift_variant	5	B38,B39,C79,C80,C83
`Chr4:2595663`	`CT`	`C`	1bp_deletion	CDS_variant	5	B38,B39,C79,C80,C83
`Chr4:2595669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B120,B133,C3
`Chr4:2595672`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B100,B95,B99
`Chr4:2595691`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,B129
`Chr4:2595701`	`T`	`TGC`	2bp_insertion	frameshift_variant	12	A7,B100,B129,B133,B140,B39,B41,B5,B50,B99,C15,C42
`Chr4:2595702`	`G`	`GCA`	2bp_insertion	frameshift_variant	1	C79
`Chr4:2595702`	`G`	`GCA`	2bp_insertion	CDS_variant	1	C79
`Chr4:2595879`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B129
`Chr4:2595879`	`GA`	`G`	1bp_deletion	CDS_variant	1	B129
`Chr4:2595906`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A7,B41,C49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807619.1

347 aa

174

347

CDP-OH_P_transf

PF01066 CDP-OH_P_transf 148-319 aa

XP_057807620.1

347 aa

174

347

CDP-OH_P_transf

PF01066 CDP-OH_P_transf 148-319 aa

XP_057807621.1

306 aa

153

306

CDP-OH_P_transf

PF01066 CDP-OH_P_transf 148-255 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807619.1`	Pfam	`PF01066`	CDP-OH_P_transf	Family	148	319	6.8e-25	89.0	CDP-alcohol phosphatidyltransferase
`XP_057807620.1`	Pfam	`PF01066`	CDP-OH_P_transf	Family	148	319	6.8e-25	89.0	CDP-alcohol phosphatidyltransferase
`XP_057807621.1`	Pfam	`PF01066`	CDP-OH_P_transf	Family	148	255	1.7e-22	81.2	CDP-alcohol phosphatidyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057951636.1
AGGAACGGCTGAAAGGATCAGCACTCTCTTCTTCTTGCCAAATTCGTCGCCGCCGCTGACTCTTTCAGCTCCGGCGAACAGCCGCCTCCGCCACTCTGAAATCCGGCGCTTCTTCTCTCAACTCCGGCGACTGATTGTCGCCATTCCTTTCTCACATTCTCTCTCTGTTTCGCGATCTCTCTCCCTCTCTCTCTCTCGCCGCCTCTGAAAGCCGCGCCGTCGGAGACGGCCATTTGGCGTCCTCATCTTCCCTCCCGTCA...

XM_057951637.1
AGGAACGGCTGAAAGGATCAGCACTCTCTTCTTCTTGCCAAATTCGTCGCCGCCGCTGACTCTTTCAGCTCCGGCGAACAGCCGCCTCCGCCACTCTGAAATCCGGCGCTTCTTCTCTCAACTCCGGCGACTGATTGTCGCCATTCCTTTCTCACATTCTCTCTCTGTTTCGCGATCTCTCTCCCTCTCTCTCTCTCGCCGCCTCTGAAAGCCGCGCCGTCGGAGACGGCCATTTGGCGTCCTCATCTTCCCTCCCGTCA...

CDS

3 records

下载 CDS FASTA

LOC131022201
ATGGCCATCTTCAGATCACTCAAAGCCCTAATTTCTCAATCTTCGAGGAAACTATCCAATCCCGATCCTTCTAGAACGTTCTTCTCCCTCTCTCTCGCCTCCGCTTCCCCAATTTCATCTCCATATTCACTGCCCAGTAACGGTTACATCCGCCGCCACTTTCTGTTTCGGTCGAGATTACTCTTTCCGGTGGGGGGGCCTCTCTTCCTCTTCAATCCTCCGTGGAAGCTCTCCCAGTCCTCCACCCCTCTTCTCTTACA...

Protein

3 records

下载 Protein FASTA

XP_057807619.1
MAIFRSLKALISQSSRKLSNPDPSRTFFSLSLASASPISSPYSLPSNGYIRRHFLFRSRLLFPVGGPLFLFNPPWKLSQSSTPLLLQSDIVLNFRKLRAINLLHQPAFRYNLGHNAPRLLNENVNEEFRKVAEVGASSGDDAIRDGYLNLPNFISFSRMLSGPLLGWMIVHDMHSYAFVGLAVSGATDWLDGYMARKMRINSVVGSYLDPLADKVLIVSVALAMVDKGLLHPGLVGLVVLRDVALVAGAAYIRASSLSWK...

XP_057807620.1
MAIFRSLKALISQSSRKLSNPDPSRTFFSLSLASASPISSPYSLPSNGYIRRHFLFRSRLLFPVGGPLFLFNPPWKLSQSSTPLLLQSDIVLNFRKLRAINLLHQPAFRYNLGHNAPRLLNENVNEEFRKVAEVGASSGDDAIRDGYLNLPNFISFSRMLSGPLLGWMIVHDMHSYAFVGLAVSGATDWLDGYMARKMRINSVVGSYLDPLADKVLIVSVALAMVDKGLLHPGLVGLVVLRDVALVAGAAYIRASSLSWK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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