Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000340`

染色体: Chr04 坐标: 3133578-3137664 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000340`
名称	SmilChr04G000340
描述	glucan endo-1,3-beta-glucosidase 4
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	3133578 - 3137664 / `+`

ID 对照

NCBI Gene ID	`LOC131022222`
GeneID	`131022222`
locus_tag	`-`
NCBI Name	`LOC131022222`
原始查询	`LOC131022222`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glucan endo-1,3-beta-glucosidase 4
产物	glucan endo-1%2C3-beta-glucosidase 4
Arabidopsis	`AT3G13560` (AT3G13560) O-Glycosyl hydrolases family 17 protein [Source:NCBI gene (formerly Entrezgene);Acc:820558] identity=64.7; qcov=0.968; evalue=0; confidence=high
Rice	`Os07g0577300` - identity=55.5; qcov=0.97; evalue=0; confidence=high
GO	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005886 (plasma membrane); GO:0005975 (carbohydrate metabolic process)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00332 (Glyco_hydro_17); PF07983 (X8)
InterPro	-
eggNOG	-
NR	GeneID:131022222

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057807654.1`
2	Cell wall	细胞壁	0.40000	`XP_057807654.1`
3	Nucleus	细胞核	0.00000	`XP_057807654.1`
4	Chromosome	染色体	0.00000	`XP_057807654.1`
5	Centromere	着丝粒	0.00000	`XP_057807654.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:3135669`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr4:3135756`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B51,C37
`Chr4:3135940`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr4:3135966`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:3136119`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr4:3136164`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B74,B8,C80,C83,D10
`Chr4:3136484`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr4:3136572`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,C87
`Chr4:3136611`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr4:3136674`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr4:3136744`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B31,B36,C16,C2,C86
`Chr4:3136833`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B56,B7,B96,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807654.1

500 aa

250

500

Glyco_hydro_17

PF00332 Glyco_hydro_17 25-344 aa PF07983 X8 360-431 aa

XP_057807655.1

500 aa

250

500

Glyco_hydro_17

PF00332 Glyco_hydro_17 25-344 aa PF07983 X8 360-431 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807654.1`	Pfam	`PF00332`	Glyco_hydro_17	Domain	25	344	2.4e-72	244.9	Glycosyl hydrolases family 17
`XP_057807654.1`	Pfam	`PF07983`	X8	Domain	360	431	4.8e-21	75.9	X8 domain
`XP_057807655.1`	Pfam	`PF00332`	Glyco_hydro_17	Domain	25	344	2.4e-72	244.9	Glycosyl hydrolases family 17
`XP_057807655.1`	Pfam	`PF07983`	X8	Domain	360	431	4.8e-21	75.9	X8 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951671.1
GAGACTACCTTTGTGCATTAAAAAAGCAATCTTGAAAACGGACAAGGGTCATACAAAAACCAGCATTTGAAATTGATTAATCCACCCTGTCTCTAGAGACCACTTCCACCCCCCACCCCCATCTCCCACCCCCCACCCCATGTGTCTGCCTCATTTCATTCCTTCCTCACAAGTCCCCAACTCACTCTCTCACTCGACTATTTTTCACTTGAGCTTCCCCAATCTTTGCTCTTTGAATATATGCACATACGCTCTCATAA...

XM_057951672.1
GTGCATTAAAAAAGCAATCTTGAAAACGGACAAGGGTCATACAAAAACCAGCATTTGAAATTGATTAATCCACCCTGTCTCTAGAGACCACTTCCACCCCCCACCCCCATCTCCCACCCCCCACCCCATGTGTCTGCCTCATTTCATTCCTTCCTCACAAGTCCCCAACTCACTCTCTCACTCGACTATTTTTCACTTGAGCTTCCCCAATCTTTGCTCTTTGAATATATGCACATACGCTCTCATAATCAAGTTTAGAA...

CDS

2 records

下载 CDS FASTA

LOC131022222
ATGATGCTCCAAATATGGCTTCAAGCTGTCCTGCTATTTTGTGGACTTTTCTTCAATGCAACTGGGGCGTTCGTGGGTGTCAATATTGGAACGGATGTCTCAAACATGCCATCGGCTCCTGATATAGTTGCAATTCTTAGAGCTCATCAAATAACTCACGTGCGTCTCTTTGATGCTGATGCGCATATGCTGAACGCTCTTGCAAACACTGGCATCGAAGTCATGGTTAGCGTTACAAACGAGGAAGTCCTGGGAATCGG...

Protein

2 records

下载 Protein FASTA

XP_057807654.1
MMLQIWLQAVLLFCGLFFNATGAFVGVNIGTDVSNMPSAPDIVAILRAHQITHVRLFDADAHMLNALANTGIEVMVSVTNEEVLGIGELPSTAAAWVNKNVAAYVPSTNITAIAVGSEVLTTLPHAAPILVPAMSNLHKALVASNLNYQVKVSTPNSMDVISRPFPPSAATFNSTLNSTVTQILQFLRNTKSFYMLNAYPYYEYVKSNGIFPLDYALFKPLSSVKQIVDPNTLFHYDSMFDALIDATYNSIADLNFSGIP...

XP_057807655.1
MMLQIWLQAVLLFCGLFFNATGAFVGVNIGTDVSNMPSAPDIVAILRAHQITHVRLFDADAHMLNALANTGIEVMVSVTNEEVLGIGELPSTAAAWVNKNVAAYVPSTNITAIAVGSEVLTTLPHAAPILVPAMSNLHKALVASNLNYQVKVSTPNSMDVISRPFPPSAATFNSTLNSTVTQILQFLRNTKSFYMLNAYPYYEYVKSNGIFPLDYALFKPLSSVKQIVDPNTLFHYDSMFDALIDATYNSIADLNFSGIP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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