Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000324`

染色体: Chr04 坐标: 2984208-2991043 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000324`
名称	SmilChr04G000324
描述	SURP and G-patch domain-containing protein 1-like protein
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	2984208 - 2991043 / `-`

ID 对照

NCBI Gene ID	`LOC131022227`
GeneID	`131022227`
locus_tag	`-`
NCBI Name	`LOC131022227`
原始查询	`LOC131022227`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SURP and G-patch domain-containing protein 1-like protein
产物	SURP and G-patch domain-containing protein 1-like protein
Arabidopsis	`AT3G52120` (AT3G52120) SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824376] identity=67.7; qcov=0.862; evalue=1.86e-155; confidence=high
Rice	`Os04g0115400` - identity=39.4; qcov=0.188; evalue=3.95e-08; confidence=weak
GO	GO:0003723 (RNA binding); GO:0005654 (nucleoplasm); GO:0006396 (RNA processing)
KEGG	-
Pfam	PF01585 (G-patch); PF01805 (Surp)
InterPro	-
eggNOG	-
NR	GeneID:131022227

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807668.1`
2	Cytoplasm	细胞质	0.80000	`XP_057807670.1`
3	Nucleoplasm	核质	0.60000	`XP_057807668.1`
4	Cytosol	细胞质基质	0.60000	`XP_057807670.1`
5	Nuclear speckle	核斑点	0.20000	`XP_057807668.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:2985005`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B99,C38,C52,C87,D10
`Chr4:2985011`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B99,C38,C52,C87,D10
`Chr4:2985014`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B99,C38,C52,C87,D10
`Chr4:2985048`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B99,C38,C52,C87,D10
`Chr4:2985084`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B99,C38,C40,C52,C87
`Chr4:2985097`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B99,C38,C40,C52,C74
`Chr4:2985154`	`TC`	`T`	1bp_deletion	frameshift_variant	7	B110,B13,B19,C1,C59,C7,D6
`Chr4:2985459`	`GAT`	`G`	2bp_deletion	frameshift_variant	77	A1,A15,A18,A24,A7,B101,B105,B107,B108,B110,B115,B118,B124,B130,B131,B133,B134,B135,B137,B138,B14,B16,B2,B21,B29,B32,B39,B51,B55,B56,B57,B58,B59,B6,B63,B65,B66,B67,B70,B73,B76,B79,B8,B85,B91,B95,B99,C11,C14,C16,C17,C2,C21,C22,C24,C25,C30,C37,C40,C44,C45,C51,C53,C55,C58,C6,C63,C64,C68,C69,C76,C79,C8,C84,D10,D11,D4
`Chr4:2985465`	`G`	`GTC`	2bp_insertion	frameshift_variant	74	A1,A15,A18,A24,A7,B101,B105,B107,B108,B110,B115,B124,B130,B131,B133,B134,B135,B137,B138,B14,B140,B16,B21,B29,B32,B39,B51,B55,B56,B57,B58,B59,B6,B63,B66,B67,B70,B73,B76,B79,B8,B85,B91,B95,B99,C11,C17,C2,C21,C22,C24,C25,C30,C33,C37,C40,C44,C45,C51,C53,C55,C58,C6,C63,C64,C68,C69,C76,C79,C8,C84,D10,D11,D4
`Chr4:2986128`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr4:2987762`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B59,C45
`Chr4:2987764`	`AG`	`A`	1bp_deletion	frameshift_variant	15	A24,B1,B13,B24,B31,B57,B6,B67,B87,C35,C42,C59,C63,C67,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807668.1

432 aa

216

432

Surp

G-patch

PF01805 Surp 139-203 aa PF01585 G-patch 350-393 aa

XP_057807670.1

377 aa

188

377

Surp

G-patch

PF01805 Surp 84-148 aa PF01585 G-patch 295-338 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807668.1`	Pfam	`PF01805`	Surp	Domain	139	203	8.2e-17	61.3	Surp module
`XP_057807668.1`	Pfam	`PF01585`	G-patch	Family	350	393	6.7e-15	55.5	G-patch domain
`XP_057807670.1`	Pfam	`PF01805`	Surp	Domain	84	148	1.2e-16	60.8	Surp module
`XP_057807670.1`	Pfam	`PF01585`	G-patch	Family	295	338	5.7e-15	55.7	G-patch domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951687.1
GGGGCCAAAATAGGAAATTCAATGGGAGCGTTTTGCGTGGCTATGATGAGGCACCGACATAATTTCTCTAAAGTCGCTAAAATAAAAATAATAAATCGTGTTCCTTTCAACCACTCAACTTTTCTTCGATCGGTAACGAATTGGGTTTGCAAATATACCACTCTGTACAGATTCCGCCAGTTTCTGATTAGGGTTCCGGTTAACTTTCCACTCTCGATCGACCGCACTCCGGTTACTCATTCTCTTCATTGTTTATTAGC...

XM_057951685.1
TTTTCTTCGATCGGTAACGAATTGGGTTTGCAAATATACCACTCTGTACAGATTCCGCCAGTTTCTGATTAGGGTTCCGGTTAACTTTCCACTCTCGATCGACCGCACTCCGGTTACTCATTCTCTTCATTGTTTATTAGGCAATGGATAAAGCAGCCAATCCTAGCTTATTTGTTAATGATGGATCTTTCATGGAGCGGTTCAGACAGCTTCAACAGGAGAAGGAGAAGAAGTCTGAAATAGTGGAGAAATCTCGATCA...

CDS

2 records

下载 CDS FASTA

LOC131022227
ATGGGAGCGTTTTGCGTGGCTATGATGAGGCACCGACATAATTTCTCTAAAGTCGCTAAAATAAAAATAATAAATCGTGTTCCTTTCAACCACTCAACTTTTCTTCGATCGGTAACGAATTGGGTTTGCAAATATACCACTCTGTACAGATTCCGCCAGTTTCTGATTAGGGTTCCGGTTAACTTTCCACTCTCGATCGACCGCACTCCGGTTACTCATTCTCTTCATTGTTTATTAGCACCACCTCCCCCAAGTGATCC...

LOC131022227
ATGGATAAAGCAGCCAATCCTAGCTTATTTGTTAATGATGGATCTTTCATGGAGCGGTTCAGACAGCTTCAACAGGAGAAGGAGAAGAAGTCTGAAATAGTGGAGAAATCTCGATCAGGCTCTAGTACTCTTGTGACATCAAGTCCAAAGACTGTTATTAGTAAGACAGCCGTAGAGTTTAAGGCTAATGGCTCTCGGAAGCCAAACCAACCTCCTTCAAGTGGAAAACTTGCCTTCAGCTTGAAGCAAAAATCAAAACT...

Protein

2 records

下载 Protein FASTA

XP_057807668.1
MDKAANPSLFVNDGSFMERFRQLQQEKEKKSEIVEKSRSGSSTLVTSSPKTVISKTAVEFKANGSRKPNQPPSSGKLAFSLKQKSKLVTPPVRFEEDGDEDDKDAGNSSDDGPMKRQKLSQHDTSELSSRQIDVAPPPPSDPTVRKVADKLASFVAKNGRQFEHVTRQKNPGDTPFKFLFDESCSDYKYYEYRLSEEEKALSQTRDSQTLESGSAPPNQVTSSQRSQHQHSKYQIPASALYETTEHRGASHSSPQTIGRY...

XP_057807670.1
MGAFCVAMMRHRHNFSKVAKIKIINRVPFNHSTFLRSVTNWVCKYTTLYRFRQFLIRVPVNFPLSIDRTPVTHSLHCLLAPPPPSDPTVRKVADKLASFVAKNGRQFEHVTRQKNPGDTPFKFLFDESCSDYKYYEYRLSEEEKALSQTRDSQTLESGSAPPNQVTSSQRSQHQHSKYQIPASALYETTEHRGASHSSPQTIGRYGESSAPSGSDPIAMMEYYMKKAAQEEKLRPPKHSKDEMPPPAALQASKKGHHMGD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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