Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000371`

染色体: Chr04 坐标: 3729974-3733047 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000371`
名称	SmilChr04G000371
描述	uncharacterized SmilChr04G000371
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	3729974 - 3733047 / `-`

ID 对照

NCBI Gene ID	`LOC131022230`
GeneID	`131022230`
locus_tag	`-`
NCBI Name	`LOC131022230`
原始查询	`LOC131022230`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA-binding ASCH domain protein [Source:NCBI gene (formerly Entrezgene);Acc:7922418]; symbol=AT2G43465; hit=AT2G43465; species=arabidopsis; confidence=medium
产物	RNA-binding ASCH domain protein [Source:NCBI gene (formerly Entrezgene);Acc:7922418]; symbol=AT2G43465; hit=AT2G43465; species=arabidopsis; confidence=medium
Arabidopsis	`AT2G43465` (AT2G43465) RNA-binding ASCH domain protein [Source:NCBI gene (formerly Entrezgene);Acc:7922418] identity=43.5; qcov=0.938; evalue=3.44e-89; confidence=medium
Rice	`-` -
GO	-
KEGG	-
Pfam	PF04266 (ASCH); PF31217 (CdiA_CT_tRNase)
InterPro	-
eggNOG	-
NR	GeneID:131022230

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057807676.1`
2	Nucleus	细胞核	1.00000	`XP_057807677.1`
3	Cytoplasm	细胞质	0.60000	`XP_057807675.1`
4	Chromosome	染色体	0.00000	`XP_057807675.1`
5	Centromere	着丝粒	0.00000	`XP_057807675.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:3730154`	`CAT`	`C`	2bp_deletion	frameshift_variant	7	A19,B123,B3,C15,C4,C82,D6
`Chr4:3730331`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr4:3730344`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:3730368`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A3,C32,C68,C80
`Chr4:3730748`	`CAT`	`C`	2bp_deletion	frameshift_variant	1	D11
`Chr4:3730827`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B23,B24,B44,B47,C7
`Chr4:3730862`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A16,B2,D7
`Chr4:3731043`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr4:3731227`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr4:3731242`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A25
`Chr4:3731270`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B132,B5,C51
`Chr4:3731372`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807675.1

408 aa

204

408

ASCH

CdiA_CT_tRNase

PF04266 ASCH 161-250 aa PF31217 CdiA_CT_tRNase 311-395 aa

XP_057807676.1

399 aa

200

399

ASCH

CdiA_CT_tRNase

PF04266 ASCH 140-241 aa PF31217 CdiA_CT_tRNase 302-386 aa

XP_057807677.1

353 aa

176

353

ASCH

PF04266 ASCH 161-250 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807675.1`	Pfam	`PF04266`	ASCH	Domain	161	250	4.9e-09	37.2	ASCH domain
`XP_057807675.1`	Pfam	`PF31217`	CdiA_CT_tRNase	Domain	311	395	7e-19	68.6	CdiA C-terminal tRNase toxin domain
`XP_057807676.1`	Pfam	`PF04266`	ASCH	Domain	140	241	2.1e-13	51.1	ASCH domain
`XP_057807676.1`	Pfam	`PF31217`	CdiA_CT_tRNase	Domain	302	386	6.7e-19	68.7	CdiA C-terminal tRNase toxin domain
`XP_057807677.1`	Pfam	`PF04266`	ASCH	Domain	161	250	3.8e-09	37.5	ASCH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057951693.1
GGGAGTAAGTTTTTAGGAGTACTATTGTATTTGGCGACAGCGGTACTAGTATGGAGGAGGAGGAGGAGTCGCCGCTGCCGCTGCCGCCGTCGTCTCCGGGAGTCGAGCCGGTAGAACTGAAAGACTGCGTAGAAGAGCTATTGAAATTCACACTCATTTCCTCCATACAAGGCAAGATTCAAATCGGTCTCTCCAACGAATACTGCGCCGATCTCCTCAGAGACGATCCGTCAGCTCCCCTTCACACTAACGCGGTTTCC...

XM_057951692.1
TTTAGGAGTACTATTGTATTTGGCGACAGCGGTACTAGTATGGAGGAGGAGGAGGAGTCGCCGCTGCCGCTGCCGCCGTCGTCTCCGGGAGTCGAGCCGGTAGAACTGAAAGACTGCGTAGAAGAGCTATTGAAATTCACACTCATTTCCTCCATACAAGGCAAGATTCAAATCGGTCTCTCCAACGAATACTGCGCCGATCTCCTCAGAGACGATCCGTCAGCTCCCCTTCACACTAACGCGGTTTCCGGAGGAGTTCC...

CDS

3 records

下载 CDS FASTA

LOC131022230
ATGGAGGAGGAGGAGGAGTCGCCGCTGCCGCTGCCGCCGTCGTCTCCGGGAGTCGAGCCGGTAGAACTGAAAGACTGCGTAGAAGAGCTATTGAAATTCACACTCATTTCCTCCATACAAGGCAAGATTCAAATCGGTCTCTCCAACGAATACTGCGCCGATCTCCTCAGAGACGATCCGTCAGCTCCCCTTCACACTAACGCGGTTTCCGGAGGAGTTCCGTCGTATCCTTTATACAAGCGACTAGCATCGTCTCTATA...

Protein

3 records

下载 Protein FASTA

XP_057807675.1
MEEEEESPLPLPPSSPGVEPVELKDCVEELLKFTLISSIQGKIQIGLSNEYCADLLRDDPSAPLHTNAVSGGVPSYPLYKRLASSLYQSICSGALCTSYKELIPSDEELNHRKKDEEWNKMIVEKGSALLSVLREVNFELHVQEPFFSLLSGIHLLILSSDGVKTIEGRCAVGDYKRIRAGHVLLVNKCLTLQVQDVRKYSSFCEMLEVESLASVLPGVTNIEEGVQTYRNFYSEEKERSNGVLAIHVRTPTSQLRVITA...

XP_057807676.1
MEEEEESPLPLPPSSPGVEPVELKDCVEELLKFTLISSIQGKIQIGLSNEYCADLLRDDPSAPLHTNAVSGGVPSYPLYKRLASSLYQSICSGALCTSYKELIPSDEELNHRKKDEEWNKMIVEKGSALLSVLREVNFELHVQEPFFSLLSDGVKTIEGRCAVGDYKRIRAGHVLLVNKCLTLQVQDVRKYSSFCEMLEVESLASVLPGVTNIEEGVQTYRNFYSEEKERSNGVLAIHVRTPTSQLRVITASIVSGLSYG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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