当前解析结果
SmilChr04G000310| 统一新 Gene ID | SmilChr04G000310 |
|---|---|
| 名称 | SmilChr04G000310 |
| 描述 | polygalacturonase inhibitor-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 2859169 - 2860551 / - |
| NCBI Gene ID | LOC131022241 |
|---|---|
| GeneID | 131022241 |
| locus_tag | - |
| NCBI Name | LOC131022241 |
| 原始查询 | LOC131022241 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | polygalacturonase inhibitor-like |
| 产物 | polygalacturonase inhibitor-like |
| Arabidopsis | AT5G06860 (PGIP1)polygalacturonase inhibiting protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:830577] identity=50.6; qcov=0.935; evalue=5.86e-100; confidence=high |
| Rice | Os05g0104200 (PGIP1)- identity=45.2; qcov=0.935; evalue=6.69e-87; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022241 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057807690.1 |
| 2 | Cell wall | 细胞壁 | 0.40000 | XP_057807690.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057807690.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807690.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807690.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:2859402 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B87,D11 |
Chr4:2859458 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B41,B63,C37 |
Chr4:2859460 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B63,C37 |
Chr4:2859505 |
AC |
A |
1bp_deletion | frameshift_variant | 19 | A10,A19,A20,A5,B112,B12,B123,B132,B3,B65,C15,C4,C50,C53,C54,C59,C82,D6,D8 |
Chr4:2859564 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C58,C78 |
Chr4:2859577 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B115,B23 |
Chr4:2859630 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B130,B54,C35,C53,D1 |
Chr4:2859659 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B38,B39,B64,C13 |
Chr4:2859686 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr4:2859725 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B115,B23 |
Chr4:2859728 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B115,B23 |
Chr4:2859749 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807690.1PF08263
LRRNT_2 27-66 aa
PF00560
LRR_1 121-143 aa
PF13855
LRR_8 121-180 aa
PF00560
LRR_1 145-167 aa
PF00560
LRR_1 170-189 aa
PF00560
LRR_1 200-217 aa
PF00560
LRR_1 291-308 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807690.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 27 | 66 | 2.3e-08 | 34.9 | Leucine rich repeat N-terminal domain |
XP_057807690.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 121 | 143 | 2.5e-23 | 77.8 | Leucine Rich Repeat |
XP_057807690.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 121 | 180 | 1.4e-11 | 44.7 | Leucine rich repeat |
XP_057807690.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 145 | 167 | 2.5e-23 | 77.8 | Leucine Rich Repeat |
XP_057807690.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 170 | 189 | 2.5e-23 | 77.8 | Leucine Rich Repeat |
XP_057807690.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 200 | 217 | 2.5e-23 | 77.8 | Leucine Rich Repeat |
XP_057807690.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 291 | 308 | 2.5e-23 | 77.8 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。