当前解析结果
SmilChr04G000295| 统一新 Gene ID | SmilChr04G000295 |
|---|---|
| 名称 | SmilChr04G000295 |
| 描述 | mitogen-activated protein kinase kinase kinase 20-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 2752620 - 2753694 / + |
| NCBI Gene ID | LOC131022246 |
|---|---|
| GeneID | 131022246 |
| locus_tag | - |
| NCBI Name | LOC131022246 |
| 原始查询 | LOC131022246 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mitogen-activated protein kinase kinase kinase 20-like |
| 产物 | mitogen-activated protein kinase kinase kinase 20-like |
| Arabidopsis | AT3G50310 (MAPKKK20)mitogen-activated protein kinase kinase kinase 20 [Source:NCBI gene (formerly Entrezgene);Acc:824193] identity=45.6; qcov=0.94; evalue=7.19e-80; confidence=high |
| Rice | Os02g0322400- identity=39.2; qcov=0.924; evalue=2.15e-50; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022246 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057807697.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057807697.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057807697.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807697.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807697.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:2752796 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr4:2752799 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr4:2752806 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr4:2752825 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr4:2752929 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | A13,B112,B122,B9,C64 |
Chr4:2752929 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,B112,B122,B9,C64 |
Chr4:2752930 |
A |
ATT |
2bp_insertion | frameshift_variant | 2 | B122,B9 |
Chr4:2752930 |
A |
ATT |
2bp_insertion | CDS_variant | 2 | B122,B9 |
Chr4:2752940 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,B9 |
Chr4:2752967 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr4:2752971 |
TGC |
T |
2bp_deletion | frameshift_variant | 13 | B114,B140,B34,B4,B75,B98,C42,C61,C80,C81,C84,C9,D4 |
Chr4:2752987 |
T |
TGG |
2bp_insertion | frameshift_variant | 11 | B114,B140,B34,B4,B98,C42,C61,C80,C81,C84,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057807697.1PF00069
Pkinase 4-266 aa
PF07714
PK_Tyr_Ser-Thr 6-261 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807697.1 |
Pfam | PF00069 |
Pkinase | Domain | 4 | 266 | 7.6e-51 | 173.7 | Protein kinase domain |
XP_057807697.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 6 | 261 | 6.7e-30 | 105.0 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。