Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000399`

染色体: Chr04 坐标: 4118592-4120985 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000399`
名称	SmilChr04G000399
描述	uncharacterized SmilChr04G000399
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	4118592 - 4120985 / `+`

ID 对照

NCBI Gene ID	`LOC131022251`
GeneID	`131022251`
locus_tag	`-`
NCBI Name	`LOC131022251`
原始查询	`LOC131022251`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	confidence=no_hit
产物	confidence=no_hit
Arabidopsis	`-` -
Rice	`-` -
GO	-
KEGG	-
Pfam	PF29561 (DUF8566)
InterPro	-
eggNOG	-
NR	GeneID:131022251

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807705.1`
2	Chromosome	染色体	1.00000	`XP_057807705.1`
3	Centromere	着丝粒	0.00000	`XP_057807705.1`
4	Chromatin	染色质	0.00000	`XP_057807705.1`
5	Telomere	端粒	0.00000	`XP_057807705.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:4119484`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr4:4119508`	`A`	`AGG`	2bp_insertion	frameshift_variant	81	A10,A11,A14,A16,A2,A21,A23,A3,A4,A5,A6,B102,B104,B105,B109,B111,B112,B117,B122,B124,B125,B126,B129,B13,B130,B134,B139,B14,B17,B23,B33,B34,B41,B42,B43,B44,B48,B49,B50,B53,B62,B63,B64,B66,B69,B73,B77,B79,B81,B82,B84,B9,B91,B99,C1,C16,C28,C33,C38,C42,C43,C44,C47,C48,C50,C52,C53,C55,C65,C73,C74,C77,C78,C79,C80,C83,C84,C87,D11,D6,D8
`Chr4:4119620`	`TAA`	`T`	2bp_deletion	frameshift_variant	60	A1,A16,A8,B102,B107,B108,B109,B119,B120,B121,B13,B134,B135,B136,B137,B21,B22,B25,B26,B29,B3,B34,B40,B45,B52,B54,B64,B65,B68,B72,B76,B8,B80,B82,B83,B88,B9,B90,B91,B92,B94,B97,C12,C23,C24,C26,C30,C34,C37,C49,C5,C56,C59,C6,C61,C70,C81,D10,D11,D2
`Chr4:4119626`	`G`	`GA`	1bp_insertion	frameshift_variant	40	A14,A2,A23,A3,A4,B102,B112,B117,B118,B124,B126,B13,B34,B42,B43,B44,B47,B5,B50,B53,B62,B65,B66,B69,B73,B79,B81,C1,C28,C35,C38,C43,C50,C53,C65,C77,C78,C79,C80,C87
`Chr4:4119652`	`AAC`	`A`	2bp_deletion	frameshift_variant	17	B11,B114,B47,B56,B59,B69,B76,B83,B85,B89,B95,B96,C52,C72,C75,C76,D3
`Chr4:4120346`	`GAT`	`G`	2bp_deletion	frameshift_variant	71	A1,A16,A3,A5,A8,B100,B102,B107,B108,B118,B119,B120,B121,B13,B134,B135,B136,B137,B21,B22,B25,B26,B29,B30,B34,B36,B40,B45,B46,B52,B54,B63,B64,B65,B68,B72,B76,B78,B79,B8,B80,B81,B82,B83,B85,B88,B9,B90,B91,B92,B94,B97,C1,C23,C24,C26,C30,C35,C37,C49,C5,C56,C59,C6,C61,C70,C81,D1,D10,D11,D2
`Chr4:4120726`	`G`	`A`	EMS_canonical_SNV	stop_gained	9	B118,B21,B26,B30,B63,B78,B81,C1,C35
`Chr4:4120886`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B15,C42,C57
`Chr4:4120913`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807705.1

255 aa

128

255

DUF8566

PF29561 DUF8566 131-230 aa

XP_057807706.1

255 aa

128

255

DUF8566

PF29561 DUF8566 131-230 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807705.1`	Pfam	`PF29561`	DUF8566	Domain	131	230	9.9e-24	85.0	Domain of unknown function (DUF8566)
`XP_057807706.1`	Pfam	`PF29561`	DUF8566	Domain	131	230	9.9e-24	85.0	Domain of unknown function (DUF8566)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951723.1
CTGATTTACAAACTAAAGGGGTTAAATGGAATTTTACTCCACCAGTAAATATAGAAGATTCTACACAATCCCGGTAAACACGCCTCCACTCTCCATTGATACTATCGAGAAATTAGGATAGAAAAAACTGGAACAAAATATCAAAATCAAAACCACCATTCCATTTAGCTTGAAGAATCGAAGAAAAATTGAAGAACCAAGTCATTGTTGCAGAGAAAAAAAAATCGAACAAGGTGAGTTCAGTTTTTATATACTTGCAG...

XM_057951722.1
CTGATTTACAAACTAAAGGGGTTAAATGGAATTTTACTCCACCAGTAAATATAGAAGATTCTACACAATCCCGGTAAACACGCCTCCACTCTCCATTGATACTATCGAGAAATTAGGATAGAAAAAACTGGAACAAAATATCAAAATCAAAACCACCATTCCATTTAGCTTGAAGAATCGAAGAAAAATTGAAGAACCAAGTCATTGTTGCAGAGAAAAAAAAATCGAACAAGATGACAACAAAGAAGGGGAAGCAGAAA...

CDS

2 records

下载 CDS FASTA

LOC131022251
ATGACAACAAAGAAGGGGAAGCAGAAAATTTTACAAGTTCATGGAAACAATAAGAAGAAAAAAACAGCAATGGATACAAGAGAACCAAATGAAGATGACGATTTCATGGATAGTCCCCCACTTCTTTCACATGGAGGCAAAAAAGATGATAGTACAAAGAAATGCAGTACCAAGAAAAAAAAGAAAACTGTTGACAGGAGTATAGCATCAACATCCGGAGAGAAGGATGAAGAGAATGTTAAAAAGAAACGTCGTCGGCA...

Protein

2 records

下载 Protein FASTA

XP_057807705.1
MTTKKGKQKILQVHGNNKKKKTAMDTREPNEDDDFMDSPPLLSHGGKKDDSTKKCSTKKKKKTVDRSIASTSGEKDEENVKKKRRRQKNPKGVKCKRRCLRKVYDDKNEEANGNSEEGNNEDDEKYPKLNTRSTPAAFYKKLRELNDAQRRAIEAIGFGKILQLTIKDVPSKLAYWVLDRYDSRSGVLEIDGTCKVKIEEDDVYRVFGFPKGAKKIDVFERTAVNELFNEWMGFFQCVEKLPYIRFDVVRTHRKT

XP_057807706.1
MTTKKGKQKILQVHGNNKKKKTAMDTREPNEDDDFMDSPPLLSHGGKKDDSTKKCSTKKKKKTVDRSIASTSGEKDEENVKKKRRRQKNPKGVKCKRRCLRKVYDDKNEEANGNSEEGNNEDDEKYPKLNTRSTPAAFYKKLRELNDAQRRAIEAIGFGKILQLTIKDVPSKLAYWVLDRYDSRSGVLEIDGTCKVKIEEDDVYRVFGFPKGAKKIDVFERTAVNELFNEWMGFFQCVEKLPYIRFDVVRTHRKT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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