当前解析结果
SmilChr04G000402| 统一新 Gene ID | SmilChr04G000402 |
|---|---|
| 名称 | SmilChr04G000402 |
| 描述 | dolichol-phosphate mannosyltransferase subunit 1-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 4196026 - 4201934 / + |
| NCBI Gene ID | LOC131022253 |
|---|---|
| GeneID | 131022253 |
| locus_tag | - |
| NCBI Name | LOC131022253 |
| 原始查询 | LOC131022253 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | dolichol-phosphate mannosyltransferase subunit 1-like |
| 产物 | dolichol-phosphate mannosyltransferase subunit 1-like |
| Arabidopsis | AT1G20575 (DPMS1)Nucleotide-diphospho-sugar transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838646] identity=86.8; qcov=1; evalue=3.83e-157; confidence=high |
| Rice | Os03g0824400- identity=82.5; qcov=0.996; evalue=2.45e-150; confidence=high |
| GO | GO:0004582 (dolichyl-phosphate beta-D-mannosyltransferase activity); GO:0005789 (endoplasmic reticulum membrane); GO:0006506 (GPI anchor biosynthetic process); GO:0019348 (GO:0019348); GO:0035269 (protein O-linked glycosylation via mannose) |
| KEGG | smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00535 (Glycos_transf_2); PF13641 (Glyco_tranf_2_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022253 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057807709.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057807709.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057807709.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807709.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807709.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:4196280 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr4:4196320 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr4:4196353 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr4:4197231 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | A11,B30,C2,C58,D4 |
Chr4:4197231 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A11,B30,C2,C58,D4 |
Chr4:4197233 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B120,B62 |
Chr4:4197259 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr4:4200807 |
ACT |
A |
2bp_deletion | frameshift_variant | 1 | B113 |
Chr4:4200807 |
ACT |
A |
2bp_deletion | CDS_variant | 1 | B113 |
Chr4:4200831 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A24,B6,C34,C51,C79 |
Chr4:4200906 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B15,C26 |
Chr4:4200925 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B81,B89 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807709.1PF13641
Glyco_tranf_2_3 10-213 aa
PF00535
Glycos_transf_2 11-179 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807709.1 |
Pfam | PF13641 |
Glyco_tranf_2_3 | Domain | 10 | 213 | 9.8e-11 | 42.5 | Glycosyltransferase like family 2 |
XP_057807709.1 |
Pfam | PF00535 |
Glycos_transf_2 | Domain | 11 | 179 | 2.4e-37 | 129.1 | Glycosyl transferase family 2 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。