Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000409`

染色体: Chr04 坐标: 4279545-4284572 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000409`
名称	SmilChr04G000409
描述	dolichol-phosphate mannosyltransferase subunit 1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	4279545 - 4284572 / `+`

ID 对照

NCBI Gene ID	`LOC131022295`
GeneID	`131022295`
locus_tag	`-`
NCBI Name	`LOC131022295`
原始查询	`LOC131022295`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	dolichol-phosphate mannosyltransferase subunit 1-like
产物	dolichol-phosphate mannosyltransferase subunit 1-like
Arabidopsis	`AT1G20575` (DPMS1) Nucleotide-diphospho-sugar transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838646] identity=87.6; qcov=1; evalue=2.97e-159; confidence=high
Rice	`Os03g0824400` - identity=82.9; qcov=0.996; evalue=4.88e-152; confidence=high
GO	GO:0004582 (dolichyl-phosphate beta-D-mannosyltransferase activity); GO:0005789 (endoplasmic reticulum membrane); GO:0006506 (GPI anchor biosynthetic process); GO:0019348 (GO:0019348); GO:0035269 (protein O-linked glycosylation via mannose)
KEGG	smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00535 (Glycos_transf_2); PF10111 (Glyco_tranf_2_2); PF13641 (Glyco_tranf_2_3)
InterPro	-
eggNOG	-
NR	GeneID:131022295

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057807723.1`
2	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057807723.1`
3	Nucleus	细胞核	0.00000	`XP_057807723.1`
4	Chromosome	染色体	0.00000	`XP_057807723.1`
5	Centromere	着丝粒	0.00000	`XP_057807723.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:4281579`	`C`	`T`	EMS_canonical_SNV	stop_gained	6	B103,B139,B17,B64,B70,C6
`Chr4:4281642`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B108,B27,C43
`Chr4:4281643`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr4:4281732`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B40,C53,C78
`Chr4:4281733`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A10,B12
`Chr4:4282581`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr4:4283454`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B106,B31,B82,C2,C65
`Chr4:4283482`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B135,B63
`Chr4:4283511`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr4:4284304`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr4:4284334`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B120,B15,B62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807723.1

273 aa

136

273

Glyco_tranf_2_3

Glyco_tranf_2_2

Glycos_transf_2

PF13641 Glyco_tranf_2_3 42-249 aa PF10111 Glyco_tranf_2_2 43-141 aa PF00535 Glycos_transf_2 43-211 aa

XP_057807725.1

241 aa

120

241

Glyco_tranf_2_3

Glyco_tranf_2_2

Glycos_transf_2

PF13641 Glyco_tranf_2_3 10-217 aa PF10111 Glyco_tranf_2_2 11-109 aa PF00535 Glycos_transf_2 11-179 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807723.1`	Pfam	`PF13641`	Glyco_tranf_2_3	Domain	42	249	5.2e-11	43.4	Glycosyltransferase like family 2
`XP_057807723.1`	Pfam	`PF10111`	Glyco_tranf_2_2	Family	43	141	2.6e-06	27.8	Glycosyltransferase like family 2
`XP_057807723.1`	Pfam	`PF00535`	Glycos_transf_2	Domain	43	211	2.1e-38	132.6	Glycosyl transferase family 2
`XP_057807725.1`	Pfam	`PF13641`	Glyco_tranf_2_3	Domain	10	217	3.5e-11	44.0	Glycosyltransferase like family 2
`XP_057807725.1`	Pfam	`PF10111`	Glyco_tranf_2_2	Family	11	109	2.1e-06	28.2	Glycosyltransferase like family 2
`XP_057807725.1`	Pfam	`PF00535`	Glycos_transf_2	Domain	11	179	1.5e-38	133.1	Glycosyl transferase family 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951740.1
CATTTTTAGGGTTTCAGCCGCTGCCTTTGAATTCTAGAGTGTTCTCCACTTCTCCCAAAATTCTACCCTAATCTCATTACAATCCGCCGTTCTCACTTTCCAGATTCAACGCTCCAAACATTTTCTACAATTCAAGTCTTCTCCACAAGCCACGGCTGCCGATGCTCTCCATCTTCATCTCTCTCCCTCTGCCTCACCCTCTATTTCTTAATCCCATCTCCCTCGACCTATCTGATTTCGCGACAGAACGGTGGTAAAGC...

XM_057951742.1
CATTTTTAGGGTTTCAGCCGCTGCCTTTGAATTCTAGAGTGTTCTCCACTTCTCCCAAAATTCTACCCTAATCTCATTACAATCCGCCGTTCTCACTTTCCAGATTCAACGCTCCAAACATTTTCTACAATTCAAGTCTTCTCCACAAGCCACGGCTGCCGATGCTCTCCATCTTCATCTCTCTCCCTCTGCCTCACCCTCTATTTCTTAATCCCATCTCCCTCGACCTATCTGATTTCGCGACAGAACGGTGGTAAAGC...

CDS

2 records

下载 CDS FASTA

LOC131022295
ATGTATAAATCAGAAAATTATGTTGTAATAATTGGGCGAATTCATCAATTAGGGAGCATTTATAAGGCTTTAGCGGTGTTGATCGGGAATTATTCAATGGAAGCCAAAGCGGAGGGGAACAAGTATAGCATAATCGTTCCCACTTTCAACGAGCGCCAAAACATCGCTCTGATTGTTTACCTCATCTTCAAGCATCTCCCGAATGTAAATTTTGAGATCATAGTGGTGGATGATGGGAGTCCTGATGGAACTCAGGAAAT...

LOC131022295
ATGGAAGCCAAAGCGGAGGGGAACAAGTATAGCATAATCGTTCCCACTTTCAACGAGCGCCAAAACATCGCTCTGATTGTTTACCTCATCTTCAAGCATCTCCCGAATGTAAATTTTGAGATCATAGTGGTGGATGATGGGAGTCCTGATGGAACTCAGGAAATTGTCAAACAGCTGCAGGAAGTATATGGAGAAGATCGTATCTTGTTGAGACCTAGACCAAAGAAGCTTGGCTTAGGGACGGCCTACGTTCACGGTTT...

Protein

2 records

下载 Protein FASTA

XP_057807723.1
MYKSENYVVIIGRIHQLGSIYKALAVLIGNYSMEAKAEGNKYSIIVPTFNERQNIALIVYLIFKHLPNVNFEIIVVDDGSPDGTQEIVKQLQEVYGEDRILLRPRPKKLGLGTAYVHGLKHATGNFVVIMDADLSHHPKYLPSFIKKQMETSASIVTGTRYVKGGGVHGWNLMRKLTSRGANVLAQTFLWPGVSDLTGSFRLYKKYVLEDVINNCVSKGYVFQMEMIVRASRKGYHIEEVPITFVDRVYGSSKLGGSEIV...

XP_057807725.1
MEAKAEGNKYSIIVPTFNERQNIALIVYLIFKHLPNVNFEIIVVDDGSPDGTQEIVKQLQEVYGEDRILLRPRPKKLGLGTAYVHGLKHATGNFVVIMDADLSHHPKYLPSFIKKQMETSASIVTGTRYVKGGGVHGWNLMRKLTSRGANVLAQTFLWPGVSDLTGSFRLYKKYVLEDVINNCVSKGYVFQMEMIVRASRKGYHIEEVPITFVDRVYGSSKLGGSEIVEYLKGLLYLLVTT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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