当前解析结果
SmilChr04G000417| 统一新 Gene ID | SmilChr04G000417 |
|---|---|
| 名称 | SmilChr04G000417 |
| 描述 | sugar transporter ERD6-like 5 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 4369893 - 4378759 / - |
| NCBI Gene ID | LOC131022304 |
|---|---|
| GeneID | 131022304 |
| locus_tag | - |
| NCBI Name | LOC131022304 |
| 原始查询 | LOC131022304 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sugar transporter ERD6-like 5 |
| 产物 | sugar transporter ERD6-like 5 |
| Arabidopsis | AT1G54730 (AT1G54730)Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841914] identity=64; qcov=0.897; evalue=0; confidence=high |
| Rice | Os11g0643800- identity=53; qcov=0.958; evalue=1.52e-169; confidence=high |
| GO | GO:0008643 (carbohydrate transport); GO:0016020 (membrane); GO:0051119 (sugar transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022304 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057807737.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057807737.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057807737.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057807737.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057807737.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:4370354 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B48,B60 |
Chr4:4370483 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B94,C73 |
Chr4:4371183 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B94,C73 |
Chr4:4371669 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr4:4371686 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr4:4378475 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B12,B35,B55 |
Chr4:4378552 |
CG |
C |
1bp_deletion | frameshift_variant | 2 | B35,C20 |
Chr4:4378552 |
CG |
C |
1bp_deletion | CDS_variant | 2 | B35,C20 |
Chr4:4378570 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057807737.1PF00083
Sugar_tr 56-474 aa
PF07690
MFS_1 58-424 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807737.1 |
Pfam | PF00083 |
Sugar_tr | Family | 56 | 474 | 5.9e-85 | 286.5 | Sugar (and other) transporter |
XP_057807737.1 |
Pfam | PF07690 |
MFS_1 | Family | 58 | 424 | 9.1e-33 | 114.3 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。