Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr04G000437`

Chromosome: Chr04 Coordinates: 4628034-4669251 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr04G000437`
Name	SmilChr04G000437
Description	probable glycosyltransferase STELLO1
Chromosome / SeqID	Chr04 / NC_080390.1
Coordinates and Strand	4628034 - 4669251 / `+`

ID Mapping

NCBI Gene ID	`LOC131022324`
GeneID	`131022324`
locus_tag	`-`
NCBI Name	`LOC131022324`
Original query	`LOC131022324`

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Functional Annotation

Source	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	probable glycosyltransferase STELLO1
Product	probable glycosyltransferase STELLO1
Arabidopsis	`AT2G41770` (AT2G41770) transmembrane protein, putative (DUF288) [Source:NCBI gene (formerly Entrezgene);Acc:818776] identity=64.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os07g0656400` - identity=56.2; qcov=0.834; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF03385 (STELLO)
InterPro	-
eggNOG	-
NR	GeneID:131022324

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057807756.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057807756.1`
3	Nucleus	细胞核	0.00000	`XP_057807756.1`
4	Chromosome	染色体	0.00000	`XP_057807756.1`
5	Centromere	着丝粒	0.00000	`XP_057807756.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr4:4628210`	`ACC`	`A`	2bp_deletion	frameshift_variant	1	C8
`Chr4:4628210`	`ACC`	`A`	2bp_deletion	CDS_variant	1	C8
`Chr4:4628428`	`C`	`T`	EMS_canonical_SNV	stop_gained	8	B113,B127,B37,B75,C21,C27,C36,C65
`Chr4:4628599`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,B40,B56,B7,B96
`Chr4:4628605`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B122,C49
`Chr4:4628878`	`C`	`T`	EMS_canonical_SNV	stop_gained	5	A20,B40,B56,B7,B96
`Chr4:4628878`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,B40,B56,B7,B96
`Chr4:4629101`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:4629107`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B67,D11
`Chr4:4629288`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr4:4629356`	`TC`	`T`	1bp_deletion	frameshift_variant	2	B2,B76
`Chr4:4629356`	`TC`	`T`	1bp_deletion	CDS_variant	2	B2,B76

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057807756.1

610 aa

305

610

STELLO

PF03385 STELLO 353-476 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057807756.1`	Pfam	`PF03385`	STELLO	Family	353	476	2.9e-13	50.1	STELLO glycosyltransferases

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057951773.1
TCCTCTTCATGATCACTTGCTGCCAATTGTTGTTGCAGCTCAAGCTCCAAAACCTACATCCTACACCAATTCACCACTTCACTCTGCGCGTGTGTGTGTGTGAGAAAAAAAGAAAGAATTACAGTGGTTGAATTGAATCCTCATAACTGATATTAATCAAATGATCGTCCAAGATCACCCCTCCACTAAATCCTCAAAACCCCATTATTACCCTCTCAATCTCAAAACTTCCAACAAAATCCCACTCTTCTCCCATACCA...

CDS

1 records

Download CDS FASTA

LOC131022324
ATGATCGTCCAAGATCACCCCTCCACTAAATCCTCAAAACCCCATTATTACCCTCTCAATCTCAAAACTTCCAACAAAATCCCACTCTTCTCCCATACCAAAAGTCTCGATTTCTCCACATGGGCTTCCGACAACTCCTTCAAATTGTTCATAATCACCATCTTCACCTTCACAGTTGCAGCATTTTTCTTCTTCTTCCACACCTCCACTCCCCTCTTCTGCTCCCAGAATTCCCAAATTCCGCACAAACTCAAAATCCC...

Protein

1 records

Download Protein FASTA

XP_057807756.1
MIVQDHPSTKSSKPHYYPLNLKTSNKIPLFSHTKSLDFSTWASDNSFKLFIITIFTFTVAAFFFFFHTSTPLFCSQNSQIPHKLKIPKPNFNSIHPILDKSSPYSSFHSELWIIVSVSDYPSIPLQNLVRTKGWQVLAVGNSKTPKDWSLKGAIFLSLDQQADLGFRVVDYLPYDSYVRKSVGYLFAIQHGAKRIFDADDRGEVIGGDLGKHFDLDLGSAVVKQQRILQYSDGNSNRTVVNPYVHFGQRSVWPRGLPLEN...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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