Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000442`

染色体: Chr04 坐标: 4691260-4701141 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000442`
名称	SmilChr04G000442
描述	phenylacetaldehyde reductase-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	4691260 - 4701141 / `-`

ID 对照

NCBI Gene ID	`LOC131022328`
GeneID	`131022328`
locus_tag	`-`
NCBI Name	`LOC131022328`
原始查询	`LOC131022328`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phenylacetaldehyde reductase-like
产物	phenylacetaldehyde reductase-like
Arabidopsis	`AT1G51410` (AT1G51410) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841566] identity=57.4; qcov=1.02; evalue=4.13e-131; confidence=high
Rice	`Os01g0528800` (CADL) - identity=53.1; qcov=1.01; evalue=5.23e-122; confidence=high
GO	GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)
KEGG	-
Pfam	PF01073 (3Beta_HSD); PF01370 (Epimerase); PF05368 (NmrA); PF07993 (NAD_binding_4); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:131022328

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057807762.1`
2	Cytoplasm	细胞质	1.00000	`XP_057807765.1`
3	Nucleus	细胞核	0.00000	`XP_057807762.1`
4	Chromosome	染色体	0.00000	`XP_057807762.1`
5	Centromere	着丝粒	0.00000	`XP_057807762.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:4691514`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,B135,B65,B96,C27
`Chr4:4692286`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B137,B50
`Chr4:4692326`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B79,C29
`Chr4:4692330`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr4:4692334`	`T`	`TAC`	2bp_insertion	frameshift_variant	1	B127
`Chr4:4692334`	`T`	`TAC`	2bp_insertion	CDS_variant	1	B127
`Chr4:4692833`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,B59,D9
`Chr4:4693079`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B124,B49,C76
`Chr4:4693134`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	D7
`Chr4:4693134`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr4:4693172`	`C`	`T`	EMS_canonical_SNV	stop_gained	21	A23,B11,B114,B128,B2,B21,B22,B36,B51,B54,B58,B69,B90,B92,B98,C18,C30,C35,C52,C71,D4
`Chr4:4693560`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B63,C6,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807762.1

320 aa

160

320

NmrA

Epimerase

GDP_Man_Dehyd

NAD_binding_4

3Beta_HSD

NAD_binding_10

PF05368 NmrA 6-105 aa PF01370 Epimerase 9-247 aa PF16363 GDP_Man_Dehyd 11-199 aa PF07993 NAD_binding_4 11-202 aa PF01073 3Beta_HSD 11-238 aa PF13460 NAD_binding_10 13-132 aa

XP_057807763.1

307 aa

154

307

Epimerase

3Beta_HSD

NAD_binding_4

PF01370 Epimerase 42-234 aa PF01073 3Beta_HSD 43-225 aa PF07993 NAD_binding_4 53-189 aa

XP_057807764.1

305 aa

152

305

NmrA

Epimerase

GDP_Man_Dehyd

NAD_binding_4

3Beta_HSD

NAD_binding_10

PF05368 NmrA 6-105 aa PF01370 Epimerase 9-247 aa PF16363 GDP_Man_Dehyd 11-198 aa PF07993 NAD_binding_4 11-202 aa PF01073 3Beta_HSD 11-238 aa PF13460 NAD_binding_10 13-132 aa

XP_057807765.1

269 aa

134

269

Epimerase

3Beta_HSD

NAD_binding_4

PF01370 Epimerase 5-196 aa PF01073 3Beta_HSD 10-187 aa PF07993 NAD_binding_4 18-151 aa

XP_057807766.1

320 aa

160

320

NmrA

Epimerase

GDP_Man_Dehyd

NAD_binding_4

3Beta_HSD

NAD_binding_10

PF05368 NmrA 6-105 aa PF01370 Epimerase 9-247 aa PF16363 GDP_Man_Dehyd 11-199 aa PF07993 NAD_binding_4 11-202 aa PF01073 3Beta_HSD 11-238 aa PF13460 NAD_binding_10 13-132 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807762.1`	Pfam	`PF05368`	NmrA	Family	6	105	2.5e-09	37.9	NmrA-like family
`XP_057807762.1`	Pfam	`PF01370`	Epimerase	Family	9	247	3e-23	83.2	NAD dependent epimerase/dehydratase family
`XP_057807762.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	11	199	1.2e-12	48.7	GDP-mannose 4,6 dehydratase
`XP_057807762.1`	Pfam	`PF07993`	NAD_binding_4	Family	11	202	1.8e-13	51.0	Male sterility protein
`XP_057807762.1`	Pfam	`PF01073`	3Beta_HSD	Family	11	238	3.1e-17	63.2	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057807762.1`	Pfam	`PF13460`	NAD_binding_10	Domain	13	132	3.4e-09	37.6	NAD(P)H-binding
`XP_057807763.1`	Pfam	`PF01370`	Epimerase	Family	42	234	1.7e-14	54.5	NAD dependent epimerase/dehydratase family
`XP_057807763.1`	Pfam	`PF01073`	3Beta_HSD	Family	43	225	2.1e-12	47.4	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057807763.1`	Pfam	`PF07993`	NAD_binding_4	Family	53	189	1.6e-09	38.0	Male sterility protein
`XP_057807764.1`	Pfam	`PF05368`	NmrA	Family	6	105	2.5e-09	37.9	NmrA-like family
`XP_057807764.1`	Pfam	`PF01370`	Epimerase	Family	9	247	2.5e-23	83.5	NAD dependent epimerase/dehydratase family
`XP_057807764.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	11	198	1.3e-12	48.6	GDP-mannose 4,6 dehydratase
`XP_057807764.1`	Pfam	`PF07993`	NAD_binding_4	Family	11	202	1.6e-13	51.2	Male sterility protein
`XP_057807764.1`	Pfam	`PF01073`	3Beta_HSD	Family	11	238	2.8e-17	63.4	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057807764.1`	Pfam	`PF13460`	NAD_binding_10	Domain	13	132	3.1e-09	37.7	NAD(P)H-binding
`XP_057807765.1`	Pfam	`PF01370`	Epimerase	Family	5	196	3.1e-14	53.7	NAD dependent epimerase/dehydratase family
`XP_057807765.1`	Pfam	`PF01073`	3Beta_HSD	Family	10	187	4.2e-12	46.4	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057807765.1`	Pfam	`PF07993`	NAD_binding_4	Family	18	151	2e-09	37.7	Male sterility protein
`XP_057807766.1`	Pfam	`PF05368`	NmrA	Family	6	105	2.5e-09	37.9	NmrA-like family
`XP_057807766.1`	Pfam	`PF01370`	Epimerase	Family	9	247	3e-23	83.2	NAD dependent epimerase/dehydratase family
`XP_057807766.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	11	199	1.2e-12	48.7	GDP-mannose 4,6 dehydratase
`XP_057807766.1`	Pfam	`PF07993`	NAD_binding_4	Family	11	202	1.8e-13	51.0	Male sterility protein
`XP_057807766.1`	Pfam	`PF01073`	3Beta_HSD	Family	11	238	3.1e-17	63.2	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057807766.1`	Pfam	`PF13460`	NAD_binding_10	Domain	13	132	3.4e-09	37.6	NAD(P)H-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057951783.1
ATCAATTCAAACCATTAAACCAATTCAAAGTTTACTACACCAAAATCCTCTCTCTCTCTCTCTCTTTTCACCCAAATCATCCTTGCTAGAAGAAAAAAAAGAGCTCAAGCTTAAGAGATTACAGACGCCAGCCAAACAACCACTGAACATCACAAGTGAGAGAGAGAAGATGAGTAGAGGAGGAAAAGAAGTGGTGTGCGTGACAGGAGCATCTGGATATGTTGCATCATGGCTGGTTAAACTTCTGCTCCACCGAGGTT...

XM_057951780.1
ACCATTAAACCAATTCAAAGTTTACTACACCAAAATCCTCTCTCTCTCTCTCTCTTTTCACCCAAATCATCCTTGCTAGAAGAAAAAAAAGAGCTCAAGCTTAAGAGATTACAGACGCCAGCCAAACAACCACTGAACATCACAAGTGAGAGAGAGAAGATGAGTAGAGGAGGAAAAGAAGTGGTGTGCGTGACAGGAGCATCTGGATATGTTGCATCATGGCTGGTTAAACTTCTGCTCCACCGAGGTTACACTGTTAA...

CDS

5 records

下载 CDS FASTA

LOC131022328
ATGAGTAGAGGAGGAAAAGAAGTGGTGTGCGTGACAGGAGCATCTGGATATGTTGCATCATGGCTGGTTAAACTTCTGCTCCACCGAGGTTACACTGTTAAAGCCACCGTTCGCAACCTCAGTGATCCGAGTAAAACTGAGCATTTGAAGGCAATGGAAGGAGCCGAGGAGAGGTTAGAGTTATTGGAAGCTGATTTAGTCGAGGAAGGTTCATTTGATTCCATAATTCATGGCTGCGTCGGCGTCTTTCATACAGCATC...

Protein

5 records

下载 Protein FASTA

XP_057807762.1
MSRGGKEVVCVTGASGYVASWLVKLLLHRGYTVKATVRNLSDPSKTEHLKAMEGAEERLELLEADLVEEGSFDSIIHGCVGVFHTASPVIIVTTNPQADLIDPAVKGTLNVLKSCHETKSVRRVVLTSSTAAVVYNGKAIGPDVVVDETWHSDPAFCQENKEWYILSKTLAEQAAWNFANENGIDLVVMNPGLVLGPLLQPTLNLTSQFVVDLIKGKSGFPFYQCVDVRDVAHAHIMGFEKSSASGRYVLVGESFTHHQL...

XP_057807763.1
MLHHGWLNFCSTEVTLLKPPFATSYKTGDPSKTEHLKAMEGAEERLELLEADLVEEGSFDSIIHGCVGVFHTASPVIIVTTNPQADLIDPAVKGTLNVLKSCHETKSVRRVVLTSSTAAVVYNGKAIGPDVVVDETWHSDPAFCQENKEWYILSKTLAEQAAWNFANENGIDLVVMNPGLVLGPLLQPTLNLTSQFVVDLIKGKSGFPFYQCVDVRDVAHAHIMGFEKSSASGRYVLVGESFTHHQLLQLLHKLYPSIVD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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