Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000445`

染色体: Chr04 坐标: 4752453-4754809 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000445`
名称	SmilChr04G000445
描述	phenylacetaldehyde reductase-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	4752453 - 4754809 / `-`

ID 对照

NCBI Gene ID	`LOC131022331`
GeneID	`131022331`
locus_tag	`-`
NCBI Name	`LOC131022331`
原始查询	`LOC131022331`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phenylacetaldehyde reductase-like
产物	phenylacetaldehyde reductase-like
Arabidopsis	`AT1G51410` (AT1G51410) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841566] identity=58.6; qcov=0.991; evalue=4.03e-132; confidence=high
Rice	`Os01g0528800` (CADL) - identity=53.4; qcov=0.994; evalue=4.38e-125; confidence=high
GO	GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)
KEGG	-
Pfam	PF01073 (3Beta_HSD); PF01370 (Epimerase); PF05368 (NmrA); PF07993 (NAD_binding_4); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:131022331

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057807770.1`
2	Cytoplasm	细胞质	0.80000	`XP_057807770.1`
3	Nucleus	细胞核	0.00000	`XP_057807770.1`
4	Chromosome	染色体	0.00000	`XP_057807770.1`
5	Centromere	着丝粒	0.00000	`XP_057807770.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:4752590`	`TGA`	`T`	2bp_deletion	frameshift_variant	1	B46
`Chr4:4752590`	`TGA`	`T`	2bp_deletion	CDS_variant	1	B46
`Chr4:4752597`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr4:4752637`	`C`	`CCA`	2bp_insertion	frameshift_variant	26	A20,A3,B1,B103,B104,B106,B108,B126,B139,B17,B26,B31,B53,B65,B68,B70,B97,C1,C20,C39,C48,C49,C6,C60,D11,D9
`Chr4:4752639`	`CTT`	`C`	2bp_deletion	frameshift_variant	26	A20,A3,B1,B103,B104,B106,B108,B126,B139,B17,B26,B31,B53,B65,B68,B70,B97,C1,C20,C39,C48,C49,C6,C60,D11,D9
`Chr4:4752650`	`CT`	`C`	1bp_deletion	frameshift_variant	2	A20,B104
`Chr4:4752650`	`CT`	`C`	1bp_deletion	CDS_variant	2	A20,B104
`Chr4:4753131`	`G`	`GT`	1bp_insertion	frameshift_variant	46	A14,A16,A21,A3,A6,A8,B1,B104,B106,B108,B123,B126,B136,B14,B20,B26,B27,B3,B31,B37,B41,B51,B53,B66,B68,B72,B80,B88,B91,C12,C14,C15,C2,C37,C40,C46,C48,C55,C60,C70,C77,C82,D10,D11,D2,D5
`Chr4:4753491`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr4:4753717`	`C`	`CCT`	2bp_insertion	frameshift_variant	91	A14,A16,A18,A19,A21,A3,A8,B1,B103,B104,B106,B109,B111,B112,B114,B117,B122,B123,B126,B136,B139,B14,B17,B20,B26,B27,B3,B31,B36,B37,B41,B44,B45,B50,B51,B52,B53,B6,B64,B65,B66,B67,B68,B7,B70,B72,B80,B84,B87,B88,B89,B91,B97,B98,B99,C1,C11,C12,C14,C15,C16,C2,C20,C22,C28,C37,C39,C4,C40,C43,C46,C48,C49,C50,C55,C6,C60,C62,C67,C69,C70,C77,C78,C81,C82,C9,D10,D2,D3,D5,D9
`Chr4:4753784`	`G`	`GT`	1bp_insertion	frameshift_variant	12	B111,B44,B6,B65,B99,C11,C16,C49,C62,C67,C69,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807770.1

322 aa

161

322

NmrA

Epimerase

GDP_Man_Dehyd

NAD_binding_4

3Beta_HSD

NAD_binding_10

PF05368 NmrA 1-102 aa PF01370 Epimerase 5-243 aa PF16363 GDP_Man_Dehyd 7-186 aa PF07993 NAD_binding_4 7-199 aa PF01073 3Beta_HSD 7-239 aa PF13460 NAD_binding_10 9-140 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807770.1`	Pfam	`PF05368`	NmrA	Family	1	102	1.1e-09	39.0	NmrA-like family
`XP_057807770.1`	Pfam	`PF01370`	Epimerase	Family	5	243	2.6e-25	89.9	NAD dependent epimerase/dehydratase family
`XP_057807770.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	7	186	2.2e-13	51.1	GDP-mannose 4,6 dehydratase
`XP_057807770.1`	Pfam	`PF07993`	NAD_binding_4	Family	7	199	4.3e-12	46.5	Male sterility protein
`XP_057807770.1`	Pfam	`PF01073`	3Beta_HSD	Family	7	239	8.1e-19	68.4	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057807770.1`	Pfam	`PF13460`	NAD_binding_10	Domain	9	140	3.5e-11	44.0	NAD(P)H-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057951787.1
GAAAATCAAAATGGACAAAAACTTAGGCGAATAGAAGCAAATCAAATGTTTTATAGTGAAAAAAAAGTAGTGGTTGTTTTTAATTGAAATTCTGGAAGATTAATACACCTAAAATTGATTAATTTGAATTGGACGGCCATCCAAAGAGACTGGTACAAACTCTGGGAAGCTGTGGAATGTAAAGTTTGATTAGCAAAGGTTAAGAAAGGTGACGTACGTGCTTGCGTAGGAGATTTCAATATTCTGCATTTCTGCATATC...

CDS

1 records

下载 CDS FASTA

LOC131022331
ATGGAAAAGGTTGTGTGTGTTACAGGAGCATCCGGCTACATAGCGTCCTGGTTGGTTAAGCTTCTCCTCCAGCGTGGTTACACTGTTAAGGCCACCGTCAGGAACCTCCGTGACTCGAGCAAGGTTGCACATCTAACAGCACTAGAAGGAGCTAACGAGAGGCTGCGTTTATATGAAGCGAACCTACTCGAGGAAGGATCATTCGATTCCGTAGTTGATGGCTGCCAAGGAGTATTTCACACTGCATCACCTGTTTTCGT...

Protein

1 records

下载 Protein FASTA

XP_057807770.1
MEKVVCVTGASGYIASWLVKLLLQRGYTVKATVRNLRDSSKVAHLTALEGANERLRLYEANLLEEGSFDSVVDGCQGVFHTASPVFVSVSDPQTELIDPAVKGTINVLKSCTKATTIKRVVITSSIAAVMYNYDSLKQDFIVDETWFSDPIFCEEKKEWYALSKTLAEKETWKFAEENGLDLVTLHPGFTIGPPLQPSLNLSCAALLNLIKEGKQLMANGVYRYVDVRDVALAHILALENPCASGRYCLVGRVTYSFEAL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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