当前解析结果
SmilChr04G000443| 统一新 Gene ID | SmilChr04G000443 |
|---|---|
| 名称 | SmilChr04G000443 |
| 描述 | phenylacetaldehyde reductase-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 4712574 - 4739143 / - |
| NCBI Gene ID | LOC131022332 |
|---|---|
| GeneID | 131022332 |
| locus_tag | - |
| NCBI Name | LOC131022332 |
| 原始查询 | LOC131022332 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phenylacetaldehyde reductase-like |
| 产物 | phenylacetaldehyde reductase-like |
| Arabidopsis | AT1G51410 (AT1G51410)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841566] identity=57.9; qcov=1.02; evalue=8.29e-125; confidence=high |
| Rice | Os01g0528800 (CADL)- identity=52.3; qcov=1.01; evalue=6.75e-116; confidence=high |
| GO | GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor) |
| KEGG | - |
| Pfam | PF01073 (3Beta_HSD); PF01370 (Epimerase); PF05368 (NmrA); PF07993 (NAD_binding_4); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022332 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057807771.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057807771.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057807771.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807771.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807771.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:4712834 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,B98 |
Chr4:4712866 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B114,B64,B84,B98 |
Chr4:4712879 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,B98 |
Chr4:4712883 |
A |
AT |
1bp_insertion | frameshift_variant | 13 | A1,B136,B16,B5,B6,B78,B94,C32,C60,C61,C68,C8,C80 |
Chr4:4712886 |
TC |
T |
1bp_deletion | frameshift_variant | 12 | B136,B16,B5,B6,B78,B94,C32,C60,C61,C68,C8,C80 |
Chr4:4712888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B50,C52 |
Chr4:4718374 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:4718378 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B104,B67,D10,D11 |
Chr4:4718399 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B104,B67,D10,D11 |
Chr4:4718432 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr4:4718914 |
C |
CA |
1bp_insertion | frameshift_variant | 27 | B1,B11,B120,B138,B16,B25,B30,B37,B38,B43,B49,B5,B54,B55,B59,B62,B63,B93,B94,C26,C33,C36,C37,C42,C56,C59,D2 |
Chr4:4718922 |
AC |
A |
1bp_deletion | frameshift_variant | 29 | B1,B11,B120,B132,B138,B15,B16,B25,B30,B37,B43,B49,B5,B54,B55,B59,B62,B63,B93,B94,C26,C33,C36,C37,C42,C56,C59,C75,D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807771.1PF05368
NmrA 6-105 aa
PF01370
Epimerase 8-240 aa
PF16363
GDP_Man_Dehyd 10-128 aa
PF07993
NAD_binding_4 10-200 aa
PF01073
3Beta_HSD 10-236 aa
PF13460
NAD_binding_10 12-130 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807771.1 |
Pfam | PF05368 |
NmrA | Family | 6 | 105 | 2.4e-11 | 44.5 | NmrA-like family |
XP_057807771.1 |
Pfam | PF01370 |
Epimerase | Family | 8 | 240 | 5.5e-24 | 85.6 | NAD dependent epimerase/dehydratase family |
XP_057807771.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 10 | 128 | 4.9e-12 | 46.7 | GDP-mannose 4,6 dehydratase |
XP_057807771.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 10 | 200 | 8.1e-14 | 52.1 | Male sterility protein |
XP_057807771.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 10 | 236 | 3.1e-19 | 69.8 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057807771.1 |
Pfam | PF13460 |
NAD_binding_10 | Domain | 12 | 130 | 3e-11 | 44.2 | NAD(P)H-binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。