当前解析结果
SmilChr04G000459| 统一新 Gene ID | SmilChr04G000459 |
|---|---|
| 名称 | SmilChr04G000459 |
| 描述 | putative disease resistance RPP13-like protein 1 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 4891296 - 4896697 / + |
| NCBI Gene ID | LOC131022342 |
|---|---|
| GeneID | 131022342 |
| locus_tag | - |
| NCBI Name | LOC131022342 |
| 原始查询 | LOC131022342 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance RPP13-like protein 1 |
| 产物 | putative disease resistance RPP13-like protein 1 |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=38.9; qcov=0.778; evalue=0; confidence=medium |
| Rice | Os05g0492200 (YR1)- identity=37.2; qcov=0.827; evalue=0; confidence=medium |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022342 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057807779.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057807779.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057807779.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807779.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807779.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:4892723 |
GAT |
G |
2bp_deletion | frameshift_variant | 10 | A11,A15,B137,B24,B32,B50,B86,C25,C34,C63 |
Chr4:4892738 |
C |
T |
EMS_canonical_SNV | stop_gained | 129 | A1,A11,A14,A16,A18,A19,A2,A23,A24,A3,A6,B100,B103,B105,B106,B11,B111,B112,B117,B118,B119,B120,B122,B123,B125,B126,B129,B13,B130,B132,B134,B136,B137,B140,B15,B17,B19,B22,B23,B24,B27,B29,B32,B41,B42,B43,B46,B48,B49,B51,B52,B53,B54,B55,B56,B58,B59,B6,B62,B64,B65,B67,B69,B7,B70,B71,B75,B77,B78,B79,B80,B81,B82,B83,B85,B86,B87,B88,B94,B95,B96,C11,C12,C13,C14,C19,C2,C22,C23,C25,C29,C30,C31,C32,C34,C35,C37,C38,C39,C4,C40,C41,C44,C45,C46,C47,C54,C56,C59,C62,C65,C67,C68,C69,C7,C70,C71,C74,C78,C79,C8,C81,C85,C9,D10,D11,D3,D7,D9 |
Chr4:4893145 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C76,D7 |
Chr4:4893169 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B31 |
Chr4:4893169 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B31 |
Chr4:4893245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:4893457 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr4:4893528 |
AT |
A |
1bp_deletion | frameshift_variant | 46 | A14,A18,A24,B103,B112,B118,B119,B125,B130,B132,B134,B137,B22,B24,B51,B52,B53,B54,B55,B56,B58,B59,B62,B64,B65,B71,B78,B80,B81,B94,B96,C23,C29,C37,C40,C56,C62,C68,C7,C70,C74,C9,D10,D3,D7,D9 |
Chr4:4893827 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr4:4893884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B71,C62 |
Chr4:4893983 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B58,C74 |
Chr4:4894032 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B115,B23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807779.1PF18052
Rx_N 12-94 aa
PF00931
NB-ARC 181-351 aa
PF23559
WHD_DRP 434-502 aa
PF23598
LRR_14 582-852 aa
PF25019
LRR_R13L1-DRL21 698-824 aa
XP_057807780.1PF18052
Rx_N 12-94 aa
PF00931
NB-ARC 181-351 aa
PF23559
WHD_DRP 434-502 aa
PF23598
LRR_14 582-852 aa
PF25019
LRR_R13L1-DRL21 698-824 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807779.1 |
Pfam | PF18052 |
Rx_N | Domain | 12 | 94 | 8.4e-24 | 84.2 | Rx N-terminal domain |
XP_057807779.1 |
Pfam | PF00931 |
NB-ARC | Domain | 181 | 351 | 2.1e-36 | 125.8 | NB-ARC domain |
XP_057807779.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 434 | 502 | 4e-26 | 91.6 | Disease resistance protein Winged helix domain |
XP_057807779.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 582 | 852 | 5.6e-40 | 137.9 | Leucine-rich repeat region |
XP_057807779.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 698 | 824 | 5.9e-56 | 188.5 | R13L1/DRL21 LRRs |
XP_057807780.1 |
Pfam | PF18052 |
Rx_N | Domain | 12 | 94 | 8.4e-24 | 84.2 | Rx N-terminal domain |
XP_057807780.1 |
Pfam | PF00931 |
NB-ARC | Domain | 181 | 351 | 2.1e-36 | 125.8 | NB-ARC domain |
XP_057807780.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 434 | 502 | 4e-26 | 91.6 | Disease resistance protein Winged helix domain |
XP_057807780.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 582 | 852 | 5.6e-40 | 137.9 | Leucine-rich repeat region |
XP_057807780.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 698 | 824 | 5.9e-56 | 188.5 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。