Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000480`

染色体: Chr04 坐标: 5187284-5190588 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000480`
名称	SmilChr04G000480
描述	protein IQ-DOMAIN 11
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	5187284 - 5190588 / `+`

ID 对照

NCBI Gene ID	`LOC131022360`
GeneID	`131022360`
locus_tag	`-`
NCBI Name	`LOC131022360`
原始查询	`LOC131022360`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein IQ-DOMAIN 11
产物	protein IQ-DOMAIN 11
Arabidopsis	`AT5G13460` (IQD11) IQ-domain 11 [Source:NCBI gene (formerly Entrezgene);Acc:831188] identity=41.8; qcov=0.96; evalue=3.91e-90; confidence=medium
Rice	`Os03g0355700` - identity=31.4; qcov=0.731; evalue=3.02e-32; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00612 (IQ); PF13178 (DUF4005)
InterPro	-
eggNOG	-
NR	GeneID:131022360

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057807795.1`
2	Nucleus	细胞核	0.60000	`XP_057807794.1`
3	Cell membrane	细胞膜	0.40000	`XP_057807794.1`
4	Nucleus membrane	核膜	0.20000	`XP_057807794.1`
5	Cytosol	细胞质基质	0.20000	`XP_057807794.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:5188273`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr4:5188430`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B138,C11,C15,C69
`Chr4:5188584`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B119,B42,B43
`Chr4:5189630`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A20,C19,C53,C54
`Chr4:5189918`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B117,D10
`Chr4:5189953`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr4:5190017`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B24,B56,B75,B96
`Chr4:5190053`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B128,B140,B91
`Chr4:5190176`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B117

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807794.1

480 aa

240

480

DUF4005

PF00612 IQ 117-136 aa PF00612 IQ 139-156 aa PF13178 DUF4005 348-422 aa

XP_057807795.1

450 aa

225

450

DUF4005

PF00612 IQ 117-136 aa PF00612 IQ 139-156 aa PF13178 DUF4005 318-392 aa

XP_057807796.1

449 aa

224

449

DUF4005

PF00612 IQ 116-135 aa PF00612 IQ 138-155 aa PF13178 DUF4005 317-391 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807794.1`	Pfam	`PF00612`	IQ	Motif	117	136	3.7e-08	33.2	IQ calmodulin-binding motif
`XP_057807794.1`	Pfam	`PF00612`	IQ	Motif	139	156	3.7e-08	33.2	IQ calmodulin-binding motif
`XP_057807794.1`	Pfam	`PF13178`	DUF4005	Family	348	422	1.8e-09	38.8	Protein of unknown function (DUF4005)
`XP_057807795.1`	Pfam	`PF00612`	IQ	Motif	117	136	3e-08	33.4	IQ calmodulin-binding motif
`XP_057807795.1`	Pfam	`PF00612`	IQ	Motif	139	156	3e-08	33.4	IQ calmodulin-binding motif
`XP_057807795.1`	Pfam	`PF13178`	DUF4005	Family	318	392	1.6e-09	38.9	Protein of unknown function (DUF4005)
`XP_057807796.1`	Pfam	`PF00612`	IQ	Motif	116	135	3e-08	33.5	IQ calmodulin-binding motif
`XP_057807796.1`	Pfam	`PF00612`	IQ	Motif	138	155	3e-08	33.5	IQ calmodulin-binding motif
`XP_057807796.1`	Pfam	`PF13178`	DUF4005	Family	317	391	1.6e-09	39.0	Protein of unknown function (DUF4005)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057951813.1
GACTGAATTATTTTGAAAGCAAACAAAATTTGAATATTTATATTAATCTCAACTTCATGTAATTAGCTTATACTGATATTTATAGGGCCCTCAACAGCTGTCTCTCCTTCAAAGACTTCTTGCTTTCTTTACCCATTCATTGCACATTAGGGTTTTCCCCACCTCCTCCAATAATGTATTTTTCACTTGAGACTTTGATGGTTTTTCCTCCTTTTCTTCATCTCCCTTCTTCATTTCATGTTGGGGCAAAAGGGCCACTT...

XM_057951812.1
ATCATACATATGTTTTCCCTCCACAAATAAGGCCGACCCTCACTCACTTTTGGTGCAAGGCCCACGTGCCCGGCACGTGAAACTCATCATAGAAAAAGATGAAATTATTGAAAGAGAAGATAACAAAGGGCAACTACAATTGACAGGAAGCCAAAGCTGAGTTCATTAAGAAAATCTTACAATAGCAATGTATTTATGAGTACTATTTTCTAGTTGTCCACATTAAGGAAGCACATACTATGCACACAAATCCGATGTTC...

CDS

3 records

下载 CDS FASTA

LOC131022360
ATGGCAAAGAAGAAGACCTGGTTCAGTCTAATAAAGAGGTTCTTCATTTCAGACCCACAATCAAGAAGAGAAAAGAAGGATAAGCGAAGGAGATGGGTATGCCGATTGCTTAAGGTGAAAGAGCTCGTGCCATCCTCTCCGAGAGAAAGGCTGCCATGGCAACTCACAGAACATAATAATACTACTTCTCTTCCAGTAACCGTTACAACAGACACTCCTGAGCTTCGGCAGATCCCCGGAAATGGGGAAACAGCCCATCA...

Protein

3 records

下载 Protein FASTA

XP_057807794.1
MAKKKTWFSLIKRFFISDPQSRREKKDKRRRWVCRLLKVKELVPSSPRERLPWQLTEHNNTTSLPVTVTTDTPELRQIPGNGETAHQHKESPESSESYSHAGILKLPHQRNRESEASAAIKVQAAFRGYLARKALRALKGVVKLQALIRGWAVRQQAINTLKCLQSIVNIQSEVFSKRCERVELQCKDYKSHDFSEKDIKVDLNSQKRWDDSTLTKEELKALLLTKREASIKRERVREYYLNHRVSFFEFKIFSYRLSNS...

XP_057807795.1
MAKKKTWFSLIKRFFISDPQSRREKKDKRRRWVCRLLKVKELVPSSPRERLPWQLTEHNNTTSLPVTVTTDTPELRQIPGNGETAHQHKESPESSESYSHAGILKLPHQRNRESEASAAIKVQAAFRGYLARKALRALKGVVKLQALIRGWAVRQQAINTLKCLQSIVNIQSEVFSKRCERVELQCKDYKSHDFSEKDIKVDLNSQKRWDDSTLTKEELKALLLTKREASIKRERVREYYLNHRRSAETERDKVYGRRRY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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