当前解析结果
SmilChr04G000485| 统一新 Gene ID | SmilChr04G000485 |
|---|---|
| 名称 | SmilChr04G000485 |
| 描述 | protein JINGUBANG |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 5233806 - 5235241 / - |
| NCBI Gene ID | LOC131022366 |
|---|---|
| GeneID | 131022366 |
| locus_tag | - |
| NCBI Name | LOC131022366 |
| 原始查询 | LOC131022366 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein JINGUBANG |
| 产物 | protein JINGUBANG |
| Arabidopsis | AT3G51930 (AT3G51930)Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824356] identity=65.5; qcov=0.92; evalue=2.68e-166; confidence=high |
| Rice | Os01g0946100 (OsWD40-31)- identity=55.8; qcov=0.866; evalue=4.14e-128; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00400 (WD40) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022366 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057807800.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057807800.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057807800.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807800.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807800.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:5234023 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B27 |
Chr4:5234023 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B27 |
Chr4:5234175 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C83 |
Chr4:5234175 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C83 |
Chr4:5234213 |
CCA |
C |
2bp_deletion | frameshift_variant | 2 | B60,C16 |
Chr4:5234213 |
CCA |
C |
2bp_deletion | CDS_variant | 2 | B60,C16 |
Chr4:5234216 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B115,B138,B26 |
Chr4:5234488 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B112,B117,B126 |
Chr4:5234533 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr4:5234555 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B128,B91 |
Chr4:5234566 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B10,B28,B68 |
Chr4:5234627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,B62,B9,B97 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807800.1PF00400
WD40 65-99 aa
PF00400
WD40 184-211 aa
PF00400
WD40 217-251 aa
PF00400
WD40 262-299 aa
PF00400
WD40 313-343 aa
PF00400
WD40 356-392 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807800.1 |
Pfam | PF00400 |
WD40 | Repeat | 65 | 99 | 7.9e-29 | 99.6 | WD domain, G-beta repeat |
XP_057807800.1 |
Pfam | PF00400 |
WD40 | Repeat | 184 | 211 | 7.9e-29 | 99.6 | WD domain, G-beta repeat |
XP_057807800.1 |
Pfam | PF00400 |
WD40 | Repeat | 217 | 251 | 7.9e-29 | 99.6 | WD domain, G-beta repeat |
XP_057807800.1 |
Pfam | PF00400 |
WD40 | Repeat | 262 | 299 | 7.9e-29 | 99.6 | WD domain, G-beta repeat |
XP_057807800.1 |
Pfam | PF00400 |
WD40 | Repeat | 313 | 343 | 7.9e-29 | 99.6 | WD domain, G-beta repeat |
XP_057807800.1 |
Pfam | PF00400 |
WD40 | Repeat | 356 | 392 | 7.9e-29 | 99.6 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。