当前解析结果
SmilChr04G000489| 统一新 Gene ID | SmilChr04G000489 |
|---|---|
| 名称 | SmilChr04G000489 |
| 描述 | protein CHROMATIN REMODELING 24 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 5272498 - 5282710 / - |
| NCBI Gene ID | LOC131022370 |
|---|---|
| GeneID | 131022370 |
| locus_tag | - |
| NCBI Name | LOC131022370 |
| 原始查询 | LOC131022370 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein CHROMATIN REMODELING 24 |
| 产物 | protein CHROMATIN REMODELING 24 |
| Arabidopsis | AT5G63950 (CHR24)chromatin remodeling 24 [Source:NCBI gene (formerly Entrezgene);Acc:836516] identity=70.2; qcov=0.635; evalue=0; confidence=high |
| Rice | Os04g0692750 (ENL1)- identity=61.5; qcov=0.63; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0015616 (DNA translocase activity); GO:0140658 (ATP-dependent chromatin remodeler activity) |
| KEGG | - |
| Pfam | PF00176 (SNF2-rel_dom); PF00271 (Helicase_C); PF04851 (ResIII) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022370 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057807804.1 |
| 2 | Chromosome | 染色体 | 0.80000 | XP_057807804.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057807804.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057807804.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057807804.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:5272860 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A1,B131 |
Chr4:5273830 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr4:5275133 |
CCT |
C |
2bp_deletion | frameshift_variant | 12 | B128,B15,B26,B35,B41,B49,B78,B94,C10,C50,C79,D5 |
Chr4:5275136 |
T |
TCG |
2bp_insertion | frameshift_variant | 12 | B128,B15,B26,B35,B41,B49,B78,B94,C10,C50,C79,D5 |
Chr4:5275152 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B26,B56,C82 |
Chr4:5275176 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,B56 |
Chr4:5275180 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,B56 |
Chr4:5275923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:5275974 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr4:5277068 |
T |
TC |
1bp_insertion | frameshift_variant | 19 | A14,A16,B1,B114,B118,B132,B139,B45,B47,B57,B76,B82,B91,C33,C42,C52,C80,C82,D1 |
Chr4:5277085 |
TCA |
T |
2bp_deletion | frameshift_variant | 18 | A14,A16,B1,B114,B132,B139,B45,B47,B57,B76,B82,B91,C33,C46,C52,C80,C82,D1 |
Chr4:5277117 |
GGA |
G |
2bp_deletion | frameshift_variant | 2 | B40,B96 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807804.1PF04851
ResIII 425-594 aa
PF00176
SNF2-rel_dom 428-725 aa
PF00271
Helicase_C 778-889 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807804.1 |
Pfam | PF04851 |
ResIII | Family | 425 | 594 | 1.4e-08 | 35.5 | Type III restriction enzyme, res subunit |
XP_057807804.1 |
Pfam | PF00176 |
SNF2-rel_dom | Domain | 428 | 725 | 1.1e-62 | 212.4 | SNF2-related domain |
XP_057807804.1 |
Pfam | PF00271 |
Helicase_C | Domain | 778 | 889 | 1.9e-23 | 83.5 | Helicase conserved C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。