当前解析结果
SmilChr04G000524| 统一新 Gene ID | SmilChr04G000524 |
|---|---|
| 名称 | SmilChr04G000524 |
| 描述 | mitochondrial inner membrane protease ATP23-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 5756241 - 5759983 / - |
| NCBI Gene ID | LOC131022403 |
|---|---|
| GeneID | 131022403 |
| locus_tag | - |
| NCBI Name | LOC131022403 |
| 原始查询 | LOC131022403 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mitochondrial inner membrane protease ATP23-like |
| 产物 | mitochondrial inner membrane protease ATP23-like |
| Arabidopsis | AT3G03420 (AT3G03420)Ku70-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:821258] identity=47.9; qcov=0.927; evalue=4.56e-51; confidence=high |
| Rice | Os04g0482700- identity=42.6; qcov=0.949; evalue=1.47e-38; confidence=medium |
| GO | GO:0004222 (metalloendopeptidase activity); GO:0031314 (extrinsic component of mitochondrial inner membrane); GO:0033615 (mitochondrial proton-transporting ATP synthase complex assembly); GO:0034982 (mitochondrial protein processing) |
| KEGG | - |
| Pfam | PF09768 (Peptidase_M76) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022403 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057807840.1 |
| 2 | Mitochondrion intermembrane space | Mitochondrion intermembrane space | 1.00000 | XP_057807840.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057807840.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807840.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807840.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:5756673 |
T |
TAA |
2bp_insertion | frameshift_variant | 6 | A2,B104,B132,B33,C16,C61 |
Chr4:5756674 |
TG |
T |
1bp_deletion | frameshift_variant | 6 | A2,B104,B132,B33,C16,C61 |
Chr4:5756678 |
T |
TC |
1bp_insertion | frameshift_variant | 6 | A2,B104,B132,B33,C16,C61 |
Chr4:5756690 |
CT |
* |
1bp_deletion | CDS_variant | 5 | B104,B9,C16,C54,C57 |
Chr4:5756706 |
T |
TG |
1bp_insertion | frameshift_variant | 2 | B104,C16 |
Chr4:5756706 |
T |
TG |
1bp_insertion | CDS_variant | 2 | B104,C16 |
Chr4:5757069 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr4:5757073 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr4:5757112 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B9,C54,C57,D7 |
Chr4:5757126 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B113,B48,C54 |
Chr4:5757327 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A25,B64,C50 |
Chr4:5757330 |
G |
GT |
1bp_insertion | frameshift_variant | 12 | A5,B112,B26,B48,B8,B9,B95,C19,C53,C54,C57,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807840.1PF09768
Peptidase_M76 34-204 aa
XP_057807841.1PF09768
Peptidase_M76 34-204 aa
XP_057807842.1PF09768
Peptidase_M76 34-204 aa
XP_057807843.1PF09768
Peptidase_M76 34-204 aa
XP_057807844.1PF09768
Peptidase_M76 34-204 aa
XP_057807845.1PF09768
Peptidase_M76 34-204 aa
XP_057807846.1PF09768
Peptidase_M76 34-204 aa
XP_057807847.1PF09768
Peptidase_M76 34-204 aa
XP_057807848.1PF09768
Peptidase_M76 34-204 aa
XP_057807849.1PF09768
Peptidase_M76 34-156 aa
XP_057807850.1PF09768
Peptidase_M76 34-156 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807840.1 |
Pfam | PF09768 |
Peptidase_M76 | Family | 34 | 204 | 1.2e-48 | 165.9 | Peptidase M76 family |
XP_057807841.1 |
Pfam | PF09768 |
Peptidase_M76 | Family | 34 | 204 | 1.2e-48 | 165.9 | Peptidase M76 family |
XP_057807842.1 |
Pfam | PF09768 |
Peptidase_M76 | Family | 34 | 204 | 1.2e-48 | 165.9 | Peptidase M76 family |
XP_057807843.1 |
Pfam | PF09768 |
Peptidase_M76 | Family | 34 | 204 | 1.2e-48 | 165.9 | Peptidase M76 family |
XP_057807844.1 |
Pfam | PF09768 |
Peptidase_M76 | Family | 34 | 204 | 1.2e-48 | 165.9 | Peptidase M76 family |
XP_057807845.1 |
Pfam | PF09768 |
Peptidase_M76 | Family | 34 | 204 | 1.2e-48 | 165.9 | Peptidase M76 family |
XP_057807846.1 |
Pfam | PF09768 |
Peptidase_M76 | Family | 34 | 204 | 1.2e-48 | 165.9 | Peptidase M76 family |
XP_057807847.1 |
Pfam | PF09768 |
Peptidase_M76 | Family | 34 | 204 | 1.2e-48 | 165.9 | Peptidase M76 family |
XP_057807848.1 |
Pfam | PF09768 |
Peptidase_M76 | Family | 34 | 204 | 1.2e-48 | 165.9 | Peptidase M76 family |
XP_057807849.1 |
Pfam | PF09768 |
Peptidase_M76 | Family | 34 | 156 | 3e-35 | 122.2 | Peptidase M76 family |
XP_057807850.1 |
Pfam | PF09768 |
Peptidase_M76 | Family | 34 | 156 | 3e-35 | 122.2 | Peptidase M76 family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
20 records
下载 cDNA FASTA11 records
下载 CDS FASTA11 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。