Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000539`

染色体: Chr04 坐标: 5999901-6020574 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000539`
名称	SmilChr04G000539
描述	uncharacterized SmilChr04G000539
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	5999901 - 6020574 / `+`

ID 对照

NCBI Gene ID	`LOC131022422`
GeneID	`131022422`
locus_tag	`-`
NCBI Name	`LOC131022422`
原始查询	`LOC131022422`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os12g0597300; species=rice; confidence=low
产物	hit=Os12g0597300; species=rice; confidence=low
Arabidopsis	`AT1G06740` (MUG3) MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=28.9; qcov=0.954; evalue=2.42e-48; confidence=low
Rice	`Os12g0597300` - identity=29.3; qcov=0.974; evalue=2.49e-52; confidence=low
GO	GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00872 (Transposase_mut); PF04434 (SWIM); PF10551 (MULE)
InterPro	-
eggNOG	-
NR	GeneID:131022422

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057807889.1`
2	Cytoplasm	细胞质	0.40000	`XP_057807889.1`
3	Cytosol	细胞质基质	0.20000	`XP_057807889.1`
4	Chromosome	染色体	0.00000	`XP_057807889.1`
5	Centromere	着丝粒	0.00000	`XP_057807889.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:6019239`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B79,C52,C56
`Chr4:6019246`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:6019266`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,A8,B54
`Chr4:6019282`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B66,D6
`Chr4:6019287`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B9,C54
`Chr4:6019292`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B61
`Chr4:6019302`	`TC`	`T`	1bp_deletion	frameshift_variant	28	A22,A8,B100,B118,B120,B135,B2,B28,B31,B41,B48,B49,B60,B61,B62,B63,B66,B7,B73,B96,B97,B98,C14,C23,C45,C62,C72,D10
`Chr4:6019316`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B34,B66,D6
`Chr4:6019375`	`TGC`	`T`	2bp_deletion	frameshift_variant	1	B126
`Chr4:6019375`	`TGC`	`T`	2bp_deletion	CDS_variant	1	B126
`Chr4:6019378`	`A`	`ATT`	2bp_insertion	frameshift_variant	1	B126
`Chr4:6019378`	`A`	`ATT`	2bp_insertion	CDS_variant	1	B126

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807889.1

392 aa

196

392

Transposase_mut

MULE

SWIM

PF00872 Transposase_mut 63-234 aa PF10551 MULE 64-157 aa PF04434 SWIM 309-340 aa

XP_057807890.1

392 aa

196

392

Transposase_mut

MULE

SWIM

PF00872 Transposase_mut 63-234 aa PF10551 MULE 64-157 aa PF04434 SWIM 309-340 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807889.1`	Pfam	`PF00872`	Transposase_mut	Family	63	234	3.8e-13	49.8	Transposase, Mutator family
`XP_057807889.1`	Pfam	`PF10551`	MULE	Domain	64	157	2e-19	70.5	MULE transposase domain
`XP_057807889.1`	Pfam	`PF04434`	SWIM	Domain	309	340	6.1e-08	32.7	SWIM zinc finger
`XP_057807890.1`	Pfam	`PF00872`	Transposase_mut	Family	63	234	3.8e-13	49.8	Transposase, Mutator family
`XP_057807890.1`	Pfam	`PF10551`	MULE	Domain	64	157	2e-19	70.5	MULE transposase domain
`XP_057807890.1`	Pfam	`PF04434`	SWIM	Domain	309	340	6.1e-08	32.7	SWIM zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

11 records

下载 cDNA FASTA

XR_009101286.1
CGGCGGTTGGGTTTACACAACATTGTGGTAGAATCAATAATTTTGTTTGTTGATTCGAAATCTAAACCCTTGTTCAATTTAATTGCAAGAACTCTCGCCTCAAACAAGCAATGGTCGGTAAAAAGAGAGGTGTGCCTCTGGCTTCTCATACGCGTGCAGTCGAGGGAGCACGAAGACTATTTCCAGGAAGCCCTTGTTTTCTGTATGGTTGAAGAAGTATCATCTTGTATAGCCCTGTTACGTTTGTTTGCCCGTCGAAA...

XR_009101279.1
CGGCGGTTGGGTTTACACAACATTGTGGTAGAATCAATAATTTTGTTTGTTGATTCGAAATCTAAACCCTTGTTCAATTTAATTGCAAGAACTCTCGCCTCAAACAAGCAATGGTCGGTAAAAAGAGAGGTGTGCCTCTGGCTTCTCATACGCGTGCAGTCGAGGGAGCACGAAGACTATTTCCAGGAAGCCCTTGTTTTCTGTATGGTTGAAGAAGTATCATCTTGTATAGCCCTGTTACGTTTGTTTGCCCGTCGAAA...

CDS

2 records

下载 CDS FASTA

LOC131022422
ATGGCGGTAGAGATGATATACGGCGGACACGAAGAATCTTATGGATTGTTACCAGGCTATCTTCACATGTTGCGGATGTGCAATCCGGGATCGTTGACCGACTTGGAAGTTGATGAGAATGATCGGTTGAAGCATCTCTTCGTAGCACTTGGTTCTTGCAGAGTCGCGTACACTATGTGCATGAGGCCAATAATTGTTGTTGACGGCACACACTTGAAGGGCCGCAATAAAGGTGTTTTGTTTGTTGCCGTCACAAAGGA...

Protein

2 records

下载 Protein FASTA

XP_057807889.1
MAVEMIYGGHEESYGLLPGYLHMLRMCNPGSLTDLEVDENDRLKHLFVALGSCRVAYTMCMRPIIVVDGTHLKGRNKGVLFVAVTKDGNEQMFPMAFGIGPIENDESWKWFLYQLKMAYGQNSETLIVSDAHISIQNVVKEVYPHAAHGLCYYHLLNKITRYGKAAVAFYQKAAYAYRESDFDKAMASLKALNKDGGAYTKLMQVAPERWARSKCPARRYSFLTSNVAESFNSRLLWARRLPICSMVEAICHIIEKWFDE...

XP_057807890.1
MAVEMIYGGHEESYGLLPGYLHMLRMCNPGSLTDLEVDENDRLKHLFVALGSCRVAYTMCMRPIIVVDGTHLKGRNKGVLFVAVTKDGNEQMFPMAFGIGPIENDESWKWFLYQLKMAYGQNSETLIVSDAHISIQNVVKEVYPHAAHGLCYYHLLNKITRYGKAAVAFYQKAAYAYRESDFDKAMASLKALNKDGGAYTKLMQVAPERWARSKCPARRYSFLTSNVAESFNSRLLWARRLPICSMVEAICHIIEKWFDE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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