Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000543`

染色体: Chr04 坐标: 6050741-6055281 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000543`
名称	SmilChr04G000543
描述	putative F-box/LRR-repeat protein At3g28410
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	6050741 - 6055281 / `-`

ID 对照

NCBI Gene ID	`LOC131022426`
GeneID	`131022426`
locus_tag	`-`
NCBI Name	`LOC131022426`
原始查询	`LOC131022426`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative F-box/LRR-repeat protein At3g28410
产物	putative F-box/LRR-repeat protein At3g28410
Arabidopsis	`AT3G28410` (AT3G28410) F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822470] identity=24.1; qcov=0.804; evalue=3.71e-12; confidence=weak
Rice	`Os06g0713400` (OsFbox328) - identity=23.2; qcov=0.92; evalue=1.45e-11; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF23622 (LRR_At1g61320_AtMIF1)
InterPro	-
eggNOG	-
NR	GeneID:131022426

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807893.1`
2	Chromosome	染色体	0.00000	`XP_057807893.1`
3	Centromere	着丝粒	0.00000	`XP_057807893.1`
4	Chromatin	染色质	0.00000	`XP_057807893.1`
5	Telomere	端粒	0.00000	`XP_057807893.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:6050896`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B137
`Chr4:6050896`	`TG`	`T`	1bp_deletion	CDS_variant	1	B137
`Chr4:6050911`	`A`	`AT`	1bp_insertion	frameshift_variant	3	B137,B44,C67
`Chr4:6050911`	`A`	`AT`	1bp_insertion	CDS_variant	3	B137,B44,C67
`Chr4:6050918`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr4:6050924`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr4:6050927`	`G`	`A`	EMS_canonical_SNV	stop_gained	11	A6,B10,B102,B137,B31,B44,B74,C16,C21,C40,C67
`Chr4:6050930`	`G`	`A`	EMS_canonical_SNV	stop_gained	91	A13,A15,A19,A2,A20,A23,A24,A25,A5,B10,B103,B112,B114,B118,B119,B120,B124,B128,B129,B131,B132,B135,B137,B139,B14,B18,B2,B20,B22,B24,B26,B3,B38,B4,B43,B44,B46,B51,B52,B53,B54,B55,B57,B58,B62,B63,B66,B67,B68,B72,B74,B76,B8,B82,B84,B86,B88,B91,B92,B95,B98,B99,C12,C14,C15,C17,C18,C2,C20,C26,C29,C39,C43,C46,C47,C49,C53,C54,C55,C56,C57,C67,C68,C70,C79,C83,C85,D5,D6,D7,D9
`Chr4:6050944`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B126,B33,B98,D4
`Chr4:6051014`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,B124,B83,C2
`Chr4:6051133`	`A`	`ATG`	2bp_insertion	frameshift_variant	4	A24,B138,B39,C47
`Chr4:6051133`	`A`	`ATG`	2bp_insertion	CDS_variant	4	A24,B138,B39,C47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807893.1

518 aa

259

518

F-box

LRR_At1g61320_AtMIF1

PF00646 F-box 32-68 aa PF23622 LRR_At1g61320_AtMIF1 117-386 aa

XP_057807894.1

511 aa

256

511

F-box

LRR_At1g61320_AtMIF1

PF00646 F-box 25-61 aa PF23622 LRR_At1g61320_AtMIF1 110-379 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807893.1`	Pfam	`PF00646`	F-box	Domain	32	68	2e-06	28.2	F-box domain
`XP_057807893.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	117	386	5.9e-13	49.7	At1g61320/AtMIF1, LRR domain
`XP_057807894.1`	Pfam	`PF00646`	F-box	Domain	25	61	2e-06	28.2	F-box domain
`XP_057807894.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	110	379	8e-13	49.2	At1g61320/AtMIF1, LRR domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951911.1
TGAGAAATATATATATAGATATATAGAGGGAGTGTGTATTATGGTGGGACATTGGAAAAGTAAGAAACTGATTTATTGTTGGAAGAGATATGAGAGAAAAAAATAGATGAGTTTATAAAGCTGATGTGGCAATTTAGAAACTAGAAACCTGGGATCATTATTGGAGGCACCCTAGGGCCACCTAGAAACCCTACTTTTTCTTTTAGTCTCTTTGGGCGATCATTCAGCCAAACAAAAACATATCTTCCATTCTTTCAAGA...

XM_057951910.1
GAAATATATATATAGATATATAGAGGGAGTGTGTATTATGGTGGGACATTGGAAAAGTAAGAAACTGATTTATTGTTGGAAGAGATATGAGAGAAAAAAATAGATGAGTTTATAAAGCTGATGTGGCAATTTAGAAACTAGAAACCTGGGATCATTATTGGAGGCACCCTAGGGCCACCTAGAAACCCTACTTTTTCTTTTAGTCTCTTTGGGCGATCATTCAGCCAAACAAAAACATATCTTCCATTCTTTCAAGAAAA...

CDS

2 records

下载 CDS FASTA

LOC131022426
ATGGAAGCATTTGGCGAAAGCAGCTTTTTGAAATCAAAAAAGCGTGTGATGGATGTAAATCGCTCTGTTTCTGCTTGTACGAGAGTTGATAAGATAAGCAAGTTGCCTGATGATATCATCGCACACATATTGTCTTTGTTCCCGACGACGGAAGCGGCGGCGACAAGCGTTGTTTCTCATCGATGGATAGAGCTGTGGAAATACACATCTAAGCTCACATTCAAAGGTGGAGCCGACCACAAATTCGCAAACAAGATTGG...

LOC131022426
ATGGAAGCATTTGGCGAAAGCAGCTTTTTGAAATCAAAAATGTTAAAAGCCAACCAAAAGATGGTTGATAAGATAAGCAAGTTGCCTGATGATATCATCGCACACATATTGTCTTTGTTCCCGACGACGGAAGCGGCGGCGACAAGCGTTGTTTCTCATCGATGGATAGAGCTGTGGAAATACACATCTAAGCTCACATTCAAAGGTGGAGCCGACCACAAATTCGCAAACAAGATTGGATTTGTGGAATTGAATGAGAA...

Protein

2 records

下载 Protein FASTA

XP_057807893.1
MEAFGESSFLKSKKRVMDVNRSVSACTRVDKISKLPDDIIAHILSLFPTTEAAATSVVSHRWIELWKYTSKLTFKGGADHKFANKIGFVELNEKTINGLKLDMHERERNINRVNSALKSHKALSLKEFKINFFLSKAEQQVVREWVEFAFARGVEKLELNLGWHERLAQSAGVVLDVEMIKSVADFKSSLKVLCVRCIEASGDAIEMLLRHCKLLERLVLVRVRRRSDVEIIGPSLKHLDMRSRCVREYYFPEYAAEYNI...

XP_057807894.1
MEAFGESSFLKSKMLKANQKMVDKISKLPDDIIAHILSLFPTTEAAATSVVSHRWIELWKYTSKLTFKGGADHKFANKIGFVELNEKTINGLKLDMHERERNINRVNSALKSHKALSLKEFKINFFLSKAEQQVVREWVEFAFARGVEKLELNLGWHERLAQSAGVVLDVEMIKSVADFKSSLKVLCVRCIEASGDAIEMLLRHCKLLERLVLVRVRRRSDVEIIGPSLKHLDMRSRCVREYYFPEYAAEYNIKVCAPNL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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