当前解析结果
SmilChr01G001993| 统一新 Gene ID | SmilChr01G001993 |
|---|---|
| 名称 | SmilChr01G001993 |
| 描述 | serine/threonine-protein phosphatase BSL3 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 35328324 - 35336128 / + |
| NCBI Gene ID | LOC131022444 |
|---|---|
| GeneID | 131022444 |
| locus_tag | - |
| NCBI Name | LOC131022444 |
| 原始查询 | LOC131022444 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein phosphatase BSL3 |
| 产物 | serine/threonine-protein phosphatase BSL3 |
| Arabidopsis | AT2G27210 (BSL3)BRI1 suppressor 1 (BSU1)-like 3 [Source:NCBI gene (formerly Entrezgene);Acc:817263] identity=88.1; qcov=1.01; evalue=0; confidence=high |
| Rice | Os12g0617900 (OsPPKL3)- identity=85.4; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004721 (phosphoprotein phosphatase activity); GO:0005515 (protein binding); GO:0009742 (brassinosteroid mediated signaling pathway) |
| KEGG | - |
| Pfam | PF00149 (Metallophos); PF07646 (Kelch_2); PF24681 (Kelch_KLHDC2_KLHL20_DRC7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022444 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057807917.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057807922.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057807917.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807917.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807917.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:35328994 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B134,B87 |
Chr1:35329686 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B9,C5,D6 |
Chr1:35329698 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B69,B9,C42,C5,D6 |
Chr1:35329705 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B69,B9,C42,C5,D6 |
Chr1:35329725 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B69,B9,C42,C5,D6 |
Chr1:35329737 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B69,B9,C42,C5,D6 |
Chr1:35329876 |
G |
GTT |
2bp_insertion | frameshift_variant | 2 | C42,C5 |
Chr1:35329876 |
G |
GTT |
2bp_insertion | CDS_variant | 2 | C42,C5 |
Chr1:35330051 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B69,C42,C5,D6 |
Chr1:35330065 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B69,C42,C5,D6 |
Chr1:35330240 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B112,B63,C43,C78 |
Chr1:35330254 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B58,C52 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807917.1PF24681
Kelch_KLHDC2_KLHL20_DRC7 77-290 aa
PF07646
Kelch_2 325-372 aa
PF00149
Metallophos 694-901 aa
XP_057807922.1PF24681
Kelch_KLHDC2_KLHL20_DRC7 77-290 aa
PF07646
Kelch_2 325-372 aa
PF00149
Metallophos 694-901 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807917.1 |
Pfam | PF24681 |
Kelch_KLHDC2_KLHL20_DRC7 | Repeat | 77 | 290 | 2e-41 | 142.4 | KLHDC2/KLHL20/DRC7 Kelch-repeats domain |
XP_057807917.1 |
Pfam | PF07646 |
Kelch_2 | Repeat | 325 | 372 | 3.7e-17 | 62.0 | Kelch motif |
XP_057807917.1 |
Pfam | PF00149 |
Metallophos | Domain | 694 | 901 | 7e-39 | 135.0 | Calcineurin-like phosphoesterase |
XP_057807922.1 |
Pfam | PF24681 |
Kelch_KLHDC2_KLHL20_DRC7 | Repeat | 77 | 290 | 1.6e-41 | 142.8 | KLHDC2/KLHL20/DRC7 Kelch-repeats domain |
XP_057807922.1 |
Pfam | PF07646 |
Kelch_2 | Repeat | 325 | 372 | 2.4e-17 | 62.6 | Kelch motif |
XP_057807922.1 |
Pfam | PF00149 |
Metallophos | Domain | 694 | 901 | 6.2e-39 | 135.2 | Calcineurin-like phosphoesterase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。