Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000583`

染色体: Chr04 坐标: 6473034-6479637 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000583`
名称	SmilChr04G000583
描述	ribosome biogenesis protein WDR12 homolog
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	6473034 - 6479637 / `+`

ID 对照

NCBI Gene ID	`LOC131022464`
GeneID	`131022464`
locus_tag	`-`
NCBI Name	`LOC131022464`
原始查询	`LOC131022464`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ribosome biogenesis protein WDR12 homolog
产物	ribosome biogenesis protein WDR12 homolog
Arabidopsis	`AT5G15550` (AT5G15550) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831408] identity=58.3; qcov=1.12; evalue=0; confidence=high
Rice	`Os07g0600400` (OsWD40-147) - identity=53; qcov=1.11; evalue=2.26e-157; confidence=high
GO	GO:0005515 (protein binding); GO:0030687 (preribosome, large subunit precursor); GO:0042254 (ribosome biogenesis)
KEGG	-
Pfam	PF00400 (WD40); PF08154 (NLE)
InterPro	-
eggNOG	-
NR	GeneID:131022464

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807935.1`
2	Cytoplasm	细胞质	0.60000	`XP_057807935.1`
3	Nucleolus	核仁	0.20000	`XP_057807935.1`
4	Chromosome	染色体	0.00000	`XP_057807935.1`
5	Centromere	着丝粒	0.00000	`XP_057807935.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:6473411`	`CA`	`C`	1bp_deletion	frameshift_variant	1	A10
`Chr4:6473411`	`CA`	`C`	1bp_deletion	CDS_variant	1	A10
`Chr4:6473420`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr4:6473424`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B38,B39,C13
`Chr4:6473624`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr4:6474306`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr4:6474713`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr4:6475306`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A13,B140,B70,C13
`Chr4:6475342`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B31,B41,B66,C79
`Chr4:6475513`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr4:6477683`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B31,B41,B66,C79
`Chr4:6477810`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807935.1

436 aa

218

436

NLE

WD40

PF08154 NLE 14-81 aa PF00400 WD40 111-138 aa PF00400 WD40 143-185 aa PF00400 WD40 201-237 aa PF00400 WD40 266-302 aa PF00400 WD40 352-390 aa

XP_057807936.1

436 aa

218

436

NLE

WD40

PF08154 NLE 14-81 aa PF00400 WD40 111-138 aa PF00400 WD40 143-185 aa PF00400 WD40 201-237 aa PF00400 WD40 266-302 aa PF00400 WD40 352-390 aa

XP_057807937.1

436 aa

218

436

NLE

WD40

PF08154 NLE 14-81 aa PF00400 WD40 111-138 aa PF00400 WD40 143-185 aa PF00400 WD40 201-237 aa PF00400 WD40 266-302 aa PF00400 WD40 352-390 aa

XP_057807938.1

436 aa

218

436

NLE

WD40

PF08154 NLE 14-81 aa PF00400 WD40 111-138 aa PF00400 WD40 143-185 aa PF00400 WD40 201-237 aa PF00400 WD40 266-302 aa PF00400 WD40 352-390 aa

XP_057807939.1

436 aa

218

436

NLE

WD40

PF08154 NLE 14-81 aa PF00400 WD40 111-138 aa PF00400 WD40 143-185 aa PF00400 WD40 201-237 aa PF00400 WD40 266-302 aa PF00400 WD40 352-390 aa

XP_057807940.1

436 aa

218

436

NLE

WD40

PF08154 NLE 14-81 aa PF00400 WD40 111-138 aa PF00400 WD40 143-185 aa PF00400 WD40 201-237 aa PF00400 WD40 266-302 aa PF00400 WD40 352-390 aa

XP_057807941.1

388 aa

194

388

NLE

WD40

PF08154 NLE 14-81 aa PF00400 WD40 111-138 aa PF00400 WD40 143-185 aa PF00400 WD40 201-237 aa PF00400 WD40 304-342 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807935.1`	Pfam	`PF08154`	NLE	Domain	14	81	1e-20	74.7	NLE (NUC135) domain
`XP_057807935.1`	Pfam	`PF00400`	WD40	Repeat	111	138	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807935.1`	Pfam	`PF00400`	WD40	Repeat	143	185	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807935.1`	Pfam	`PF00400`	WD40	Repeat	201	237	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807935.1`	Pfam	`PF00400`	WD40	Repeat	266	302	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807935.1`	Pfam	`PF00400`	WD40	Repeat	352	390	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807936.1`	Pfam	`PF08154`	NLE	Domain	14	81	1e-20	74.7	NLE (NUC135) domain
`XP_057807936.1`	Pfam	`PF00400`	WD40	Repeat	111	138	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807936.1`	Pfam	`PF00400`	WD40	Repeat	143	185	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807936.1`	Pfam	`PF00400`	WD40	Repeat	201	237	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807936.1`	Pfam	`PF00400`	WD40	Repeat	266	302	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807936.1`	Pfam	`PF00400`	WD40	Repeat	352	390	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807937.1`	Pfam	`PF08154`	NLE	Domain	14	81	1e-20	74.7	NLE (NUC135) domain
`XP_057807937.1`	Pfam	`PF00400`	WD40	Repeat	111	138	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807937.1`	Pfam	`PF00400`	WD40	Repeat	143	185	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807937.1`	Pfam	`PF00400`	WD40	Repeat	201	237	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807937.1`	Pfam	`PF00400`	WD40	Repeat	266	302	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807937.1`	Pfam	`PF00400`	WD40	Repeat	352	390	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807938.1`	Pfam	`PF08154`	NLE	Domain	14	81	1e-20	74.7	NLE (NUC135) domain
`XP_057807938.1`	Pfam	`PF00400`	WD40	Repeat	111	138	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807938.1`	Pfam	`PF00400`	WD40	Repeat	143	185	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807938.1`	Pfam	`PF00400`	WD40	Repeat	201	237	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807938.1`	Pfam	`PF00400`	WD40	Repeat	266	302	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807938.1`	Pfam	`PF00400`	WD40	Repeat	352	390	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807939.1`	Pfam	`PF08154`	NLE	Domain	14	81	1e-20	74.7	NLE (NUC135) domain
`XP_057807939.1`	Pfam	`PF00400`	WD40	Repeat	111	138	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807939.1`	Pfam	`PF00400`	WD40	Repeat	143	185	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807939.1`	Pfam	`PF00400`	WD40	Repeat	201	237	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807939.1`	Pfam	`PF00400`	WD40	Repeat	266	302	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807939.1`	Pfam	`PF00400`	WD40	Repeat	352	390	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807940.1`	Pfam	`PF08154`	NLE	Domain	14	81	1e-20	74.7	NLE (NUC135) domain
`XP_057807940.1`	Pfam	`PF00400`	WD40	Repeat	111	138	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807940.1`	Pfam	`PF00400`	WD40	Repeat	143	185	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807940.1`	Pfam	`PF00400`	WD40	Repeat	201	237	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807940.1`	Pfam	`PF00400`	WD40	Repeat	266	302	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807940.1`	Pfam	`PF00400`	WD40	Repeat	352	390	4.5e-35	119.3	WD domain, G-beta repeat
`XP_057807941.1`	Pfam	`PF08154`	NLE	Domain	14	81	8.3e-21	74.9	NLE (NUC135) domain
`XP_057807941.1`	Pfam	`PF00400`	WD40	Repeat	111	138	5.3e-29	100.1	WD domain, G-beta repeat
`XP_057807941.1`	Pfam	`PF00400`	WD40	Repeat	143	185	5.3e-29	100.1	WD domain, G-beta repeat
`XP_057807941.1`	Pfam	`PF00400`	WD40	Repeat	201	237	5.3e-29	100.1	WD domain, G-beta repeat
`XP_057807941.1`	Pfam	`PF00400`	WD40	Repeat	304	342	5.3e-29	100.1	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057951958.1
TTCTCTCGAATTCATTTCCATTTCTCCTTTCCTCTCTCATTTTTTCCACATAGGAAAAATGACATCTTCTTCTTCGTCTTCTTCATCCTTCCCACATACCAAAACGACTTTATTTTCCCCTTCTTCTTCGTCCGATGGAGACTTCGAGAGAATTGTGGAAATGATTGTCGATATGCAAACGATTGTCAAAGAACATTTCATCAACCAAGCACCCGAAAGAAGGATATTCACCGACACGACATTTCATCAACCTGCCCTCT...

XM_057951952.1
TCTCGAATTCATTTCCATTTCTCCTTTCCTCTCTCATTTTTTCCACATAGGAAAAATGACATCTTCTTCTTCGTCTTCTTCATCCTTCCCACATACCAAAACGACTTTATTTTCCCCTTCTTCTTCGTCCGATGGAGACTTCGAGAGAATTGTGGAAATGATTGTCGATATGCAAACGATTGTCAAAGAACATTTCATCAACCAAGCACCCGAAAGAAGGATATTCACCGACACGACATTTCATCAACCTGCCCTCTCTC...

CDS

7 records

下载 CDS FASTA

LOC131022464
ATGGATATTCACCCAGACGAAGAAGGAGAAGCTAAGCAGGTTCAAGTGCGCTTCATAACGAAGCTACAACAGCCGTACAAAGTGCAGCAAGCTTCTATCTCCATACCTGCCAATCTCACTCGCTTCGGCCTCTCTGCACTCGTCAACAATCTCCTCCTCACATCGAATGCGGATTGGACAACGGAGCCTTTTGATTTTCTCATTGATGGAGAGCTGGTTCGCATGTCACTTGAAGAGTTCCTTCTTGCCAAAGGCATTTC...

Protein

7 records

下载 Protein FASTA

XP_057807935.1
MDIHPDEEGEAKQVQVRFITKLQQPYKVQQASISIPANLTRFGLSALVNNLLLTSNADWTTEPFDFLIDGELVRMSLEEFLLAKGISAEKVLEIEYIKAVAPRNQEEPSLHDDWVSAVDGSNDGYILTGCYDDLGRVWKAGGICTHVLDGHSGPLTSVCNLMPKVDSIVGQVVATGSKDRTLRLWKFGEEDPIDQTKKIRSVKVLRGHTDAVQSIAAIPSGDVVCSGSWDCTINLWNTTANDPEDSVSVKKRKKGGQDKE...

XP_057807936.1
MDIHPDEEGEAKQVQVRFITKLQQPYKVQQASISIPANLTRFGLSALVNNLLLTSNADWTTEPFDFLIDGELVRMSLEEFLLAKGISAEKVLEIEYIKAVAPRNQEEPSLHDDWVSAVDGSNDGYILTGCYDDLGRVWKAGGICTHVLDGHSGPLTSVCNLMPKVDSIVGQVVATGSKDRTLRLWKFGEEDPIDQTKKIRSVKVLRGHTDAVQSIAAIPSGDVVCSGSWDCTINLWNTTANDPEDSVSVKKRKKGGQDKE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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