Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000588`

染色体: Chr04 坐标: 6550428-6559710 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000588`
名称	SmilChr04G000588
描述	uncharacterized SmilChr04G000588
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	6550428 - 6559710 / `-`

ID 对照

NCBI Gene ID	`LOC131022471`
GeneID	`131022471`
locus_tag	`-`
NCBI Name	`LOC131022471`
原始查询	`LOC131022471`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	OSJNBa0028F23.1; symbol=OSJNBa0028F23.1; hit=Os03g0811200; species=rice; confidence=low
产物	OSJNBa0028F23.1; symbol=OSJNBa0028F23.1; hit=Os03g0811200; species=rice; confidence=low
Arabidopsis	`-` -
Rice	`Os03g0811200` (OSJNBa0028F23.1) - identity=28.1; qcov=0.331; evalue=5.53e-10; confidence=low
GO	GO:0000077 (DNA damage checkpoint signaling); GO:0005634 (nucleus); GO:0042393 (histone binding); GO:0045944 (positive regulation of transcription by RNA polymerase II)
KEGG	-
Pfam	PF18428 (BRCT_3)
InterPro	-
eggNOG	-
NR	GeneID:131022471

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807947.1`
2	Chromosome	染色体	0.80000	`XP_057807947.1`
3	Telomere	端粒	0.20000	`XP_057807947.1`
4	Nucleoplasm	核质	0.20000	`XP_057807950.1`
5	Centromere	着丝粒	0.00000	`XP_057807950.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:6551053`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:6551111`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B59,B75
`Chr4:6551387`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A13,B140,C13
`Chr4:6551925`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B56,B7,B96,C56
`Chr4:6553776`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B46,B87,C78,D9
`Chr4:6554500`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B54,B88
`Chr4:6554500`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B54,B88
`Chr4:6554567`	`TG`	`T`	1bp_deletion	frameshift_variant	43	A10,A14,A21,A25,A5,A9,B101,B106,B111,B117,B135,B137,B20,B29,B37,B40,B43,B45,B5,B54,B72,B73,B80,B82,B83,B87,B90,B91,B99,C12,C36,C51,C52,C56,C59,C60,C61,C62,C78,C79,C8,C83,D3
`Chr4:6554570`	`TA`	`T`	1bp_deletion	frameshift_variant	40	A10,A14,A21,A25,A5,A9,B101,B106,B117,B135,B137,B20,B29,B37,B40,B43,B45,B5,B54,B72,B73,B80,B82,B83,B87,B90,B91,B99,C12,C36,C51,C52,C56,C59,C60,C61,C78,C8,C83,D3
`Chr4:6554603`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B54,B90
`Chr4:6554617`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B73,C52,C60,C71,D3
`Chr4:6554672`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B127,B130,B45,C74,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807947.1

1045 aa

522

1045

BRCT_3

PF18428 BRCT_3 927-1020 aa

XP_057807948.1

1045 aa

522

1045

BRCT_3

PF18428 BRCT_3 927-1020 aa

XP_057807949.1

1045 aa

522

1045

BRCT_3

PF18428 BRCT_3 927-1020 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807947.1`	Pfam	`PF18428`	BRCT_3	Domain	927	1020	7.8e-12	45.8	BRCA1 C Terminus (BRCT) domain
`XP_057807948.1`	Pfam	`PF18428`	BRCT_3	Domain	927	1020	7.8e-12	45.8	BRCA1 C Terminus (BRCT) domain
`XP_057807949.1`	Pfam	`PF18428`	BRCT_3	Domain	927	1020	7.8e-12	45.8	BRCA1 C Terminus (BRCT) domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057951964.1
AGTAAATCATTGAACAAAGCTGGGTCGTCTTCTCTCACTACCATCTCGAACTTGTTGATACCCAGAGAGAGAAGGAGAGGACGGCGGAAGAGAGAATGAGAGATTGAGAAAGGTGGCGGGGCGGGAGAGACAGAATAGGGAAAATATTTCTTCCACTACTTCAGTTTCCCGGGAAACTTTACCTTGGCGCCAAAATTCGTCGCTCCTAAAACCACCCGCCGGCGCCGGAATTGCACTTCAACGACGGCATACTAAGTTAT...

XM_057951965.1
AGTAAATCATTGAACAAAGCTGGGTCGTCTTCTCTCACTACCATCTCGAACTTGTTGATACCCAGAGAGAGAAGGAGAGGACGGCGGAAGAGAGAATGAGAGATTGAGAAAGGTGGCGGGGCGGGAGAGACAGAATAGGGAAAATATTTCTTCCACTACTTCAGTTTCCCGGGAAACTTTACCTTGGCGCCAAAATTCGTCGCTCCTAAAACCACCCGCCGGCGCCGGAATTGCACTTCAACGACGGCATACTAAGTTAT...

CDS

4 records

下载 CDS FASTA

LOC131022471
ATGGGCAGATTACCCGGTTTTCGCCCTCCACAATTCTCTGAGGAGGATGCGTGGTTGCCTGGTTGGCTTCAGCAAGGCAATGACGAATGGTTGGATGTTGAGAGCACGAAGGAAGATCACATTACATTTGAGAAGCGTGTTGAGGAATTAAGAGACTTTAACAGTGGAGATTCATTGAGGGACAAAGGTGGATGTAATGTTGGTCAATTATTTATATCCGGGACTGACAGTTCACCCTTCAGTTGTGCTCAATCTGCTAA...

Protein

4 records

下载 Protein FASTA

XP_057807947.1
MGRLPGFRPPQFSEEDAWLPGWLQQGNDEWLDVESTKEDHITFEKRVEELRDFNSGDSLRDKGGCNVGQLFISGTDSSPFSCAQSANDVVHFHLCLSSDGDSENAALSNDACETEPNYPAVAQPLGTLKIQKNANLSTYPHAGAVNCTQTVELERDDKKIELLKLNDNVHFSGAASDAVELCIAASEALVINELIDSDSLEKSSSASAILEASLKLKQARLEVWKNTFANSFSVTSDMDYLSDLDDISMESVYEDAGIHL...

XP_057807948.1
MGRLPGFRPPQFSEEDAWLPGWLQQGNDEWLDVESTKEDHITFEKRVEELRDFNSGDSLRDKGGCNVGQLFISGTDSSPFSCAQSANDVVHFHLCLSSDGDSENAALSNDACETEPNYPAVAQPLGTLKIQKNANLSTYPHAGAVNCTQTVELERDDKKIELLKLNDNVHFSGAASDAVELCIAASEALVINELIDSDSLEKSSSASAILEASLKLKQARLEVWKNTFANSFSVTSDMDYLSDLDDISMESVYEDAGIHL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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